Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00354 ATGAAGAGGGCAAGAGATGATATTTACTCTTCTTCTCAATTCAAACGTCCCTTTGGTTCTTCACGTGGTGATTCCTATGGCCAAGGCCCTGGGAATGGAGGTGGCGGTGGACTTGTTATCGGCGGAGGAGGAGGTGGGGGAGCAACTACTTCCCAAAAACTGACTACCAATGATGCTTTATCGTATTTGAAGGAAGTGAAAGACATGTTCCAAGACCAAAAAGAAAAATATGACATGTTCCTCGAGGTCATGAAAGATTTCAAGGCTCAAAAGACTGACACTCAAGGTGTCATAGAAAGGGTAAAGGACCTCTTCAAAGGTCACAACAATTTGATTTTTGGATTCAACACTTTCCTGCCAAAAGGATATGAGATAACGCTTGATGAAGAGGAGGCTCCTCAGAAGAAAACGGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGCTTCCAAAATGATGAGCATGTTTACAAATCATTCTTGGACATTTTGAATATGTATCGCAAAGAGCACAAGGAGATTGGTGAAGTTTACAGTGAGGTTGCTACCCTTTTTAAAGAGCATAGAGATTTGCTCGAGGAGTTCACTAGATTCTTACCAGATAATTCTGCAGCACCTTCCACACAGCATGCTCCATTTGGTCGAAATTCTTTGCAGCGCTTCAATGAGCGAAGTTCTATGACACCCATGATGCGGCAAATGCAAGCAGAAAAGCAACGTTATCGGCGAGATCGATTTCCTTCCCATGATCGTGATATGAGTGTTGAACGTCCTGATCTGGATGACGACAAGACAATGATGAACATGCACAAGGAGCAAAGGAAACGTGAGAGCAGGGATAGAAGGATTCGCGATCATGATGATAGAGAACATGATCTTGATAACTCACAACGCTTTCCTGACAAAAAGAAATCTGTTAAGAAGGCTGAAGCTTATGGGCTGTCTTCTGACTTTGCTTCTCACGATGATAAAGATGCATTAAAGATCATGTCTAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGCGCTGAGGACTACCAAGCATTCTTGAAGTGCCTTAATATTTTTAGCAACGGAATAATTAGAAGGAATGATTTACAAAATTTGGTGACTGATTTACTTGGAAAGCATTCTGATCTCATGAGCGAATTCAATGATTTCTTAGAGCGTTGTGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGCCACTAGCTACTGAAGGTCATTCATCAAGATCAACCAAGTTGGAGGAAAAAGAACACAAGCGTGAGATGGACGGAGCTAAAGAGAAGGAGAGATACAAGGAGAAATACATGGGAAAATCCATCCAAGAACTTGACCTTAGTGACTGCAAACGTTGTACTCCCAGCTACCGGCTTCTACCTGCTGATTATCCAATTCCTACGGCTAGTCAGCGATCTGAGCTTGGTGCGCAAGTATTGAATGATCACTGGGTATCTGTGACTTCAGGAAGTGAGGATTACTCTTTCAAACATATGCGCCGAAATCAATACGAAGAAAGCTTGTTCAGATGTGAAGACGACAGGTTTGAGTTGGACATGTTATTAGAGTCTGTGAGTTCTGCTGCTAAACGAGCTGAAGAGTTGTATAACAACATTATTGAAAATAAGATCAGTGTGGAGAGTCTGAGTCGCATTGAAGATCAATTCACTGTTCTAAATCTAAGATGCATTGAACGCCTATATGGTGACCATGGTCTTGACGTCCTAGACATACTGCGTAAGAACCCAACTCATGCTCTGCCTGTAATATTGACTCGACTGAAGCAGAAACAAGAGGAGTGGACTAGGTGCCGTTCAGATTTCAATAAAGTTTGGGCCGACATTTATTCCAAAAATCACTACAAATCACTTGATCATCGCAGCTTCTATTTCAAGCAACAAGATTCAAAGAACTTGAGCACAAAATCTTTGGTGACTGAGATTAAAGAAATTAAAGAGAAGCAGCAAAAAGAGGATGACATCGTTCAGTCTATTGCTGCTGGAGCTAAACATCCCCTCATTCCACATCTGGAATTTGACTTTTCTGATGCTGATGCTGATATTCACGAGGATCTGTATAAACTGGTTCGTTATTCATGTGAGGAAGTATTCTCAAGTAAAGAGTTATTCAATAAAATCATGAGGCTCTGGTGTACCTTCTTGGAACCAATGCTTGGTGTTACTTCCCAATCGCACGGGACAGAAAGGATAGAGGGCAGGAAAGTAGGACAAAGCGCTCGGAGTTCTGTTGCACCTAATGTAGGAGGTGATGGAAGCCCTCACAGAGACTCAATTTCAAGGTTACCAAAATCTGACAAGACTGAAGTTGAAGGTAGAGTGACTGAAGTGAAAAATGGTCACCAGACTAGTGTAGCGACCAATGGTAAAGAAAATGGTTCTGTTGGTAGAGATGATCTTTTATTGGATAATAAAGGACAGAAAAGTGTTGAATGCAGTGATAAAGCCCCTGGATTTGGTAAACAGATCTCATCTGATGAACAAGCAGCAAGAAACTCTGCATCTGTCAATATTAGAGGCGAGAGCAGTGTGAACAGAACCAACTTAGATATGTCTCCAGGACGCGTACTTACTCCATCCCGACCTACTGACGCTGATGTCTCTGTAACCATAGCCAAGTCTCCGAGTTCTAATGTACCTTTGGTGGAGGGATGTGACGTTGCCACTCCAGTACCAGTTACTAATGGCATGTTAATCGAGAACAGTAAAGTTAAAAGCCATGAAGAATCTTCTGTGCCTTGCAAAGTTGAAAAAGAAGAGGGTGAGTTATCCCCAAATGCCGACTCTGAGGAGGATAACTTTGCTGCCTATGAAGATTCAAATGTGCAGTCAAAGCACAATGTTGATAGTGGCAAATATGAGTCTAAAAATGGAGAGGTTGGAGGTGACAATGATGCAGATGCTGATGACGAAGACAGCGAAAATGTTTCTGAAGCTGGTGAAGATGTGTCAGGAAGTGAGTCTGCTGGTGATGAATGCTCCCGGGGAGATCACGAGGAGGAAGATATGGAACATGATGATGTTGATGGTAAGGCTGAGAGCGAAGGTGAAGCTGAGGGGATGTGCGACACACAAACTGGAGGAGATGGCTCACCTTTACCGTTATCAGAGAGGTTCCTTTTGACTGTGAAACCTCTCACAAAGCATGTATCAGCAGTCTCATTCGTTGAAGATGTGAAGGATTCAAGGGTGTTTTACGGAAATGATGATTTCTATGCGCTTTTTAGGCTTCATCAAATTCTTTATGAAAGGATCTTATCTGCAAAAGAAAATTCAACGAGCGCCGAAATGAAATGGAAAGCAAAAGATTCTACTTCCACAGATTCATATACAAGGTTTATGGATGCATTATATAATTTGCTCGATGGATCTGCCGAAAATGCTAAGTTTGAAGATGAATGTCGAGCAATTCTTGGGAACCAGTCTTATGTGTTATTCACATTAGACAAGTTAATATATAAATTAATCAGACAGCTTCAAACTGTTGCAACTGACGAGGAAGACAATAAGCTTCTTCAATTATATGAGTACGAAAAATCTCGGAAACCCGGGAAATTAAATGATTCAGTATATCATTCAAATGCACATGTCATCCTTCATGAGGAGAACATATATCGTTTTCAATCTTCCTCAAGCCCTTCTCGACTCTCCATTCAGCTCATGGACAATATGAATGAAAAACCCGAGTTTTCTGCTGTTTCTGTTGATCCAGATTTTTCTTTTTATCTGCACAATGATTTTCTTTCTGTCCTTCCTGCCAAAAAGGAACCTCATGGCATTTTACTGGAAAGAAACAAACCCAAATATGGGGACTTAGACGAGCTTTCTGCAATTTGTGCTGTAATGGAAGATGTCAAAGTAATTAATGGATTGGAATGCAAGATATCTTGCAACTCATCCAAGATTTCTTATGTTCTTGACACACAAGATTTTTTCTTCCGTCCAAGAAGAAAAAGACGAACATCTTCATCATCATCAAGTACATCATCTTCTCGGTCTCGCAAGGAAAGAGAGGAAAGATACCGCAAATTGATGACGTCCTCCACCTAA 4107 0.411 MKRARDDIYSSSQFKRPFGSSRGDSYGQGPGNGGGGGLVIGGGGGGGATTSQKLTTNDALSYLKEVKDMFQDQKEKYDMFLEVMKDFKAQKTDTQGVIERVKDLFKGHNNLIFGFNTFLPKGYEITLDEEEAPQKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKEIGEVYSEVATLFKEHRDLLEEFTRFLPDNSAAPSTQHAPFGRNSLQRFNERSSMTPMMRQMQAEKQRYRRDRFPSHDRDMSVERPDLDDDKTMMNMHKEQRKRESRDRRIRDHDDREHDLDNSQRFPDKKKSVKKAEAYGLSSDFASHDDKDALKIMSSQAFSFCEKVKEKLSSAEDYQAFLKCLNIFSNGIIRRNDLQNLVTDLLGKHSDLMSEFNDFLERCENIDGFLAGVMSKKPLATEGHSSRSTKLEEKEHKREMDGAKEKERYKEKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNIIENKISVESLSRIEDQFTVLNLRCIERLYGDHGLDVLDILRKNPTHALPVILTRLKQKQEEWTRCRSDFNKVWADIYSKNHYKSLDHRSFYFKQQDSKNLSTKSLVTEIKEIKEKQQKEDDIVQSIAAGAKHPLIPHLEFDFSDADADIHEDLYKLVRYSCEEVFSSKELFNKIMRLWCTFLEPMLGVTSQSHGTERIEGRKVGQSARSSVAPNVGGDGSPHRDSISRLPKSDKTEVEGRVTEVKNGHQTSVATNGKENGSVGRDDLLLDNKGQKSVECSDKAPGFGKQISSDEQAARNSASVNIRGESSVNRTNLDMSPGRVLTPSRPTDADVSVTIAKSPSSNVPLVEGCDVATPVPVTNGMLIENSKVKSHEESSVPCKVEKEEGELSPNADSEEDNFAAYEDSNVQSKHNVDSGKYESKNGEVGGDNDADADDEDSENVSEAGEDVSGSESAGDECSRGDHEEEDMEHDDVDGKAESEGEAEGMCDTQTGGDGSPLPLSERFLLTVKPLTKHVSAVSFVEDVKDSRVFYGNDDFYALFRLHQILYERILSAKENSTSAEMKWKAKDSTSTDSYTRFMDALYNLLDGSAENAKFEDECRAILGNQSYVLFTLDKLIYKLIRQLQTVATDEEDNKLLQLYEYEKSRKPGKLNDSVYHSNAHVILHEENIYRFQSSSSPSRLSIQLMDNMNEKPEFSAVSVDPDFSFYLHNDFLSVLPAKKEPHGILLERNKPKYGDLDELSAICAVMEDVKVINGLECKISCNSSKISYVLDTQDFFFRPRRKRRTSSSSSSTSSSRSRKEREERYRKLMTSST 1368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00354 1368 SUPERFAMILY PAH2 domain 335 400 IPR036600 GO:0006355
Trre11g00354 1368 MobiDBLite consensus disorder prediction 240 310 - -
Trre11g00354 1368 MobiDBLite consensus disorder prediction 921 942 - -
Trre11g00354 1368 FunFam Paired amphipathic helix protein Sin3 58 120 - -
Trre11g00354 1368 Pfam Sin3 family co-repressor 464 555 IPR013194 -
Trre11g00354 1368 MobiDBLite consensus disorder prediction 1336 1368 - -
Trre11g00354 1368 ProSiteProfiles PAH domain profile. 331 400 IPR003822 GO:0006355
Trre11g00354 1368 ProSiteProfiles PAH domain profile. 136 206 IPR003822 GO:0006355
Trre11g00354 1368 MobiDBLite consensus disorder prediction 1 48 - -
Trre11g00354 1368 MobiDBLite consensus disorder prediction 815 829 - -
Trre11g00354 1368 MobiDBLite consensus disorder prediction 863 882 - -
Trre11g00354 1368 MobiDBLite consensus disorder prediction 918 1052 - -
Trre11g00354 1368 MobiDBLite consensus disorder prediction 796 810 - -
Trre11g00354 1368 MobiDBLite consensus disorder prediction 983 997 - -
Trre11g00354 1368 FunFam Paired amphipathic helix protein SIN3 328 402 - -
Trre11g00354 1368 MobiDBLite consensus disorder prediction 206 237 - -
Trre11g00354 1368 MobiDBLite consensus disorder prediction 423 442 - -
Trre11g00354 1368 SUPERFAMILY PAH2 domain 50 121 IPR036600 GO:0006355
Trre11g00354 1368 MobiDBLite consensus disorder prediction 417 442 - -
Trre11g00354 1368 MobiDBLite consensus disorder prediction 1350 1368 - -
Trre11g00354 1368 Pfam Paired amphipathic helix repeat 353 397 IPR003822 GO:0006355
Trre11g00354 1368 Pfam Paired amphipathic helix repeat 75 119 IPR003822 GO:0006355
Trre11g00354 1368 Pfam Paired amphipathic helix repeat 159 203 IPR003822 GO:0006355
Trre11g00354 1368 Gene3D Paired amphipathic helix 58 120 IPR036600 GO:0006355
Trre11g00354 1368 MobiDBLite consensus disorder prediction 742 854 - -
Trre11g00354 1368 SUPERFAMILY PAH2 domain 133 205 IPR036600 GO:0006355
Trre11g00354 1368 MobiDBLite consensus disorder prediction 968 982 - -
Trre11g00354 1368 Gene3D Paired amphipathic helix 328 402 IPR036600 GO:0006355
Trre11g00354 1368 FunFam Paired amphipathic helix SIN3-like protein 135 206 - -
Trre11g00354 1368 PANTHER SIN3B-RELATED 52 1226 IPR039774 GO:0003714
Trre11g00354 1368 ProSiteProfiles PAH domain profile. 52 122 IPR003822 GO:0006355
Trre11g00354 1368 MobiDBLite consensus disorder prediction 206 310 - -
Trre11g00354 1368 Coils Coil 535 555 - -
Trre11g00354 1368 MobiDBLite consensus disorder prediction 776 795 - -
Trre11g00354 1368 Pfam C-terminal domain of Sin3a protein 1084 1331 IPR031693 -
Trre11g00354 1368 SMART hdac_interact2seq4b 462 562 IPR013194 -
Trre11g00354 1368 Gene3D Paired amphipathic helix 134 207 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00354 Trre-Chr11 2771714 2780383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00354 38 155 WRKY Transcription Factor Family AT4G12020 49.580 8.55e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre11g00354 Sin3a_C 2.2e-55 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00354 K11644 - gmx:100807181 2108.57