Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00347 ATGGACGCAAGAACCATAGGACATAAACGGCATAGGCCTTCCGAGGAGAAGCAAATGCAAAACAAAATGCATGAATCAAGCAACACTAATTATATCATCAATGCATTGCTAGTAGATGGTGTGACTAAAACCAGACGTTTGGAGCATAATATGCTTGAATCAATAGGTGTTCGAACAAAGTCTGTAATTGGTGCTCAAGAAGCAATACAACTTTTGTTGACTGGTGTTAAATTTGACTTCATATTTGTTGACTTTGATTTGTCCAGTGGATCTCAGTTGGTGAGGCAGATGCGTGCAATGGGAGTACCAAGCAAGGTGGTGGGCATGTTAACATACATCAATGATCATGATAAACAAACGTTTCATGAATCAGGAGCTAATGGCATCACTGAGAAACCATTGACCCCAAAAAATATCAAATACATCATTGATCTCCTTCAATGCCTCATGTGA 453 0.3929 MDARTIGHKRHRPSEEKQMQNKMHESSNTNYIINALLVDGVTKTRRLEHNMLESIGVRTKSVIGAQEAIQLLLTGVKFDFIFVDFDLSSGSQLVRQMRAMGVPSKVVGMLTYINDHDKQTFHESGANGITEKPLTPKNIKYIIDLLQCLM 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00347 150 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 145 - -
Trre11g00347 150 SUPERFAMILY CheY-like 34 143 IPR011006 -
Trre11g00347 150 MobiDBLite consensus disorder prediction 1 22 - -
Trre11g00347 150 Gene3D - 33 148 - -
Trre11g00347 150 ProSiteProfiles Response regulatory domain profile. 34 147 IPR001789 GO:0000160
Trre11g00347 150 Pfam Response regulator receiver domain 36 142 IPR001789 GO:0000160
Trre11g00347 150 SMART REC_2 33 143 IPR001789 GO:0000160
Trre11g00347 150 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00347 Trre-Chr11 2742958 2744420 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00347 32 143 Response Regulator Gene Family AT3G04280 31.034 1.47e-10 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre11g00347 Response_reg 1.8e-07 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00347 - K12767 tpra:123904015 234.958