Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00345 ATGGGTGCACCATCCATGACAAAGTCCAAGGAGACCAAAATGCGAATCATAAAGCGTAAATCAAATGACACTCCTTATCCCATCACTACATTGCTAGTAGATGGTGTGACTGCAACCAGACGTTTGGAGCATCATATGTTTGAATCAATAGGCATTCGAACAGAACCTGCAAATGGTGCTGAAGAAGCAATTCAGATTTTATCGACTGGTGTAAACTTTGACTTCATATTTGTTGATTCTGATTTGCCGATTACCAGTGGACCTCAGTTGGTGAGACAGATGCGTGCAATGGGGATAAGGGGCAAGGTGGTGGGAATGATAGAAAATTTGAACAATCAAAATCTGCAAATGTTTCATCAAGCAAGAGCTGATGCCTGCGTTACAAAACCTTTTACCCCAGAAGGCTTACAACAGATCATTGGAATCCTTCGACGCATCTAA 441 0.4195 MGAPSMTKSKETKMRIIKRKSNDTPYPITTLLVDGVTATRRLEHHMFESIGIRTEPANGAEEAIQILSTGVNFDFIFVDSDLPITSGPQLVRQMRAMGIRGKVVGMIENLNNQNLQMFHQARADACVTKPFTPEGLQQIIGILRRI 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00345 146 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 142 - -
Trre11g00345 146 SUPERFAMILY CheY-like 28 140 IPR011006 -
Trre11g00345 146 ProSiteProfiles Response regulatory domain profile. 29 144 IPR001789 GO:0000160
Trre11g00345 146 Pfam Response regulator receiver domain 31 140 IPR001789 GO:0000160
Trre11g00345 146 Gene3D - 15 144 - -
Trre11g00345 146 SMART REC_2 28 140 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00345 Trre-Chr11 2734645 2736113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00345 2 132 Response Regulator Gene Family AT3G04280 27.068 7.63e-10 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre11g00345 Response_reg 2.3e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00345 - K03413 tpra:123906480 220.32