Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00339 ATGGCTTTGCAATTACCTTCCTGTTTCTCTTCATTTCCCAATGAATATTTTAATTACCAGGTCTTCCTCAGTTTCAGGGGCACTGACACTCGGTATGTTTTTGCTAATAATCTCTATCGTGCTCTTGAGGACAAGGGAATCCACACCTTTATTGATCACACTGGTCTTCAGAGAGGGGATGAAATCACACCAACACTCATCAAAACCATCAATGAGTCTAGAATTTATATTCCTATATTTTCTAATAACTATGCTTCTTCTTCATTTTGTTTGGATGAACTTGTCCACATCATGAAGGGCTTCAGAAAAAAAGGCCGCCTTGTTCTTCCTGTCTTTTACGGCGTGGATCCTTCTAATGTGAGGCATCAGAATGGCAGTTACTCACTTGCTGAGTGCAAAATGAAGTTCCAAAACAATGAGAAGAACATGAAGCGGTTGTATCAATGGAAGAAAGCTCTTAACCGAGCTGCTAACATTGCTGGCTACCATTTGAAAACTGGATCAGACATGAACGAATATGAACACGCGTTTATTGGAAATATAGTTCAAGTTGTTTCCAATAAGATCAATCGAGCGCCTTTACATGTTGTTGATTACCCTGTTGGACTCGAGTCTCGAGTAAGTAAAGTGAACTCACTTCTGAATGACGAGGCTTGTAATGATGGAGTTTGCATGATTGGGATTCATGGAACAGGAGGAATTGGTAAATCAACACTTGCTCGAGCAGTTTATAATTTTATTGCTGATCAATTTGAGTGTTTGTGTTACCTTGAAGATGTGAGAAAGAATTCATTAAAACATCTCCAAGAGCAGCTCCTTCGCAAAACAATTAGTTTGGAACTGAAGATAGGAGGTGTCAATGAAGGAATTGGAATCATTAAAGAAAGGCTACATCATAAGAAGGTCTTGTTGATTCTCGATGACGTTGACCATTTGACGCAGCTAGAATTTTTAGCCGGAGGATTTGATTGGTTTGGTCCTAGCAGCAGAGTCATCATTACCGCTAGAGACAAAAGTTTGTTAACATGTCATGGGATTGAAAGAATATATGAAGTAGAAGGCTTAGATTGTTATGAATCTCTTGAATTGTTTAAGTCGAAGGCTTTTAAAACTAAGAAAGTTGATTCAATATTTAATGATGATATTGTGAACCGTGCAATTAGTTATGCTTCTGGCCTTCCATTAGCTATAGATGTCATAGGTTCTAATTTGTCAGGAAAGCCTATAGCAGAATGGAAATCTATGTTAGATCAATATAAAAGGATTCCGCCTAAAGATATCCAAAGTATACTAAAAGTAAGCTTTGATGATTTGGATGAAGAACCAAAAAATGTCTTTCTAGATATTGCTTGTTTCTTTAAAGGGCGTAGTTTGAAAGAGGTTGAAGGTATACTTAATGCTCATTATGGTTATTGCATAGAACATCATGTTGGAGTGTTGGTTGATAAATCTCTCACAAAGATTGATCATGCCTCTGTGTGGTTACATGACTTGATAGAGGACATGGGTAAAGAAATTGTTCGAAAAGAATCACCCGATCATCCTGAAAAACGCACTAGATTGTGGTTTCACAAAGATATAGTTAAAGTTTTAGAACAAAACAAGGGAACTAATGAAACTAAAATGATATATCTGGACTACCCCTCAGAGAAAGCTGTAATAGATTGGAATGGAAAAGGCTTCAAGAAAATGACAAATCTAAAAACACTTGTCGTTAAAAATGATAATTGCCGTTCTCTTGAGGATATTTCTGCAATTCCGCCAAATCTACAAATATTGTCTGCATTCAACTGCGAATCATTGAATTCCTCAAGTAAAAGCATGTTATTGAATAAGAAATTGCATGAGCATGGAAAAATAAAGTTGTTTAGTTTCCCATCAGCAGAAGGTGAGATGATTCCGGAGTGGTTTAACCGCCAAAGTAGAGGAGGAACGTTTTCTTTCTGGTTCCGTGGCAAGTTGCCATCCATAATGATCTTATATTCTATTAGGCCTATTAGGCCTAATTATAAATTTAAGTTAATTGATTACTTTTCTTGGGAACTGTCATTCAATCTCTGCATATTGGCCTTTGGGTGGAATGTTGAATGCTCTGACGCATATATGGTTGAAAAGATGTTATCAACAAATCATACATATCTTCTTAATCTTTTTATGAAAAAAGGGATTGGATCTCATCTTTATTTTGAACCCGAGTTCGAGGAAGAGAAGTATGATGAGCCTTGGCGGGAACTAATGCCTAAACTGGATGAAGCATTTGAAAAAAATGAATGGATCCATGCAGAAATTAAGTGTGAGTTTATAGATACGTTTCATTTGTATTTCAAGGAGGAAAACAATGTGGACCATATCCGCTTCTCCGATCCTACATCACAATCCCAGCCACTTCTGAAAATGAATGATGATGATGATGATTACACGGATACGGGGGAAAACAATGAGGACCAGCCACTTCTGAAAAAGCAAAGATTGTTGGACGTTGGAGATTTCACCAAACCTTATAAAAGGAGAAAATTCAAGATTGCTCGACGTGGAAGATTTAGATACAGACCTTCAATTATGAAAAATAAAAAATCGTTGAACGTGGAAGAACTGCAACACCGTATGGCTTTATTGTCGCTCTGA 2625 0.3707 MALQLPSCFSSFPNEYFNYQVFLSFRGTDTRYVFANNLYRALEDKGIHTFIDHTGLQRGDEITPTLIKTINESRIYIPIFSNNYASSSFCLDELVHIMKGFRKKGRLVLPVFYGVDPSNVRHQNGSYSLAECKMKFQNNEKNMKRLYQWKKALNRAANIAGYHLKTGSDMNEYEHAFIGNIVQVVSNKINRAPLHVVDYPVGLESRVSKVNSLLNDEACNDGVCMIGIHGTGGIGKSTLARAVYNFIADQFECLCYLEDVRKNSLKHLQEQLLRKTISLELKIGGVNEGIGIIKERLHHKKVLLILDDVDHLTQLEFLAGGFDWFGPSSRVIITARDKSLLTCHGIERIYEVEGLDCYESLELFKSKAFKTKKVDSIFNDDIVNRAISYASGLPLAIDVIGSNLSGKPIAEWKSMLDQYKRIPPKDIQSILKVSFDDLDEEPKNVFLDIACFFKGRSLKEVEGILNAHYGYCIEHHVGVLVDKSLTKIDHASVWLHDLIEDMGKEIVRKESPDHPEKRTRLWFHKDIVKVLEQNKGTNETKMIYLDYPSEKAVIDWNGKGFKKMTNLKTLVVKNDNCRSLEDISAIPPNLQILSAFNCESLNSSSKSMLLNKKLHEHGKIKLFSFPSAEGEMIPEWFNRQSRGGTFSFWFRGKLPSIMILYSIRPIRPNYKFKLIDYFSWELSFNLCILAFGWNVECSDAYMVEKMLSTNHTYLLNLFMKKGIGSHLYFEPEFEEEKYDEPWRELMPKLDEAFEKNEWIHAEIKCEFIDTFHLYFKEENNVDHIRFSDPTSQSQPLLKMNDDDDDYTDTGENNEDQPLLKKQRLLDVGDFTKPYKRRKFKIARRGRFRYRPSIMKNKKSLNVEELQHRMALLSL 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00339 874 Gene3D - 187 347 IPR027417 -
Trre11g00339 874 Pfam TIR domain 18 191 IPR000157 GO:0007165
Trre11g00339 874 Gene3D - 355 439 IPR042197 -
Trre11g00339 874 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 162 IPR035897 -
Trre11g00339 874 SUPERFAMILY "Winged helix" DNA-binding domain 426 532 IPR036390 -
Trre11g00339 874 Gene3D - 16 186 IPR035897 -
Trre11g00339 874 SMART till_3 18 159 IPR000157 GO:0007165
Trre11g00339 874 PRINTS Disease resistance protein signature 390 404 - -
Trre11g00339 874 PRINTS Disease resistance protein signature 296 310 - -
Trre11g00339 874 PRINTS Disease resistance protein signature 225 240 - -
Trre11g00339 874 Pfam NB-ARC domain 205 432 IPR002182 GO:0043531
Trre11g00339 874 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 191 - -
Trre11g00339 874 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 449 IPR027417 -
Trre11g00339 874 MobiDBLite consensus disorder prediction 785 814 - -
Trre11g00339 874 ProSiteProfiles TIR domain profile. 17 189 IPR000157 GO:0007165
Trre11g00339 874 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 606 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00339 Trre-Chr11 2690928 2695228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00339 201 541 WRKY Transcription Factor Family AT5G45050 34.670 6.46e-52 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00339 - - tpra:123906486 907.131