Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00318 ATGGCATCAGGTGGAACAGAAGCTTTCCCAGATTTAGGCAAACACTGCCAACATCTTGATTGTCACCAGCTAGATTTCCTTCCTTTCACATGTGATGGCTGCAAACAAGTATTCTGTGTAGAACATAGATCCTACAAGGCTCATGAATGTCCGAAACACGACCACAATAGTAGAAAAGTGGTTGTTTGCGAAGAATGTTCCATGTCCATGGAGATCACAAACAACACCGGAGAAAACGAAGAAACGATCTTAAAAATGCACCGCACTTCAGGGAAGTGTGACCCTAGCAAGAAGAAGAAACCAACTTGCCCGGTGAAGCGTTGCAAAGAGATTTTGACGTTTTCTAACACGAGTACCTGTAAAACTTGCCACATTAAGGTGTGTCTCAAGCACCGATTTGCGGCCGATCATGCTTGTAGTAAGGGAGATTCATCATCCTCCTTAACAAATGCTGTTGGTAATGGAAGATGGAATAATAGGTTTATGGCTGCTTTGGCTTCAAGGAATAATCAAGATTGTGCCAAAAAAGCTGGAACTCGTTCTACTACTTCTCCTCCTAGTACTCCTTCTGTTAAGGCTTATTGA 585 0.4274 MASGGTEAFPDLGKHCQHLDCHQLDFLPFTCDGCKQVFCVEHRSYKAHECPKHDHNSRKVVVCEECSMSMEITNNTGENEETILKMHRTSGKCDPSKKKKPTCPVKRCKEILTFSNTSTCKTCHIKVCLKHRFAADHACSKGDSSSSLTNAVGNGRWNNRFMAALASRNNQDCAKKAGTRSTTSPPSTPSVKAY 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00318 194 SMART AN1_Zf_4 103 144 IPR000058 GO:0008270
Trre11g00318 194 SMART AN1_Zf_4 16 55 IPR000058 GO:0008270
Trre11g00318 194 Pfam AN1-like Zinc finger 16 53 IPR000058 GO:0008270
Trre11g00318 194 Pfam AN1-like Zinc finger 103 141 IPR000058 GO:0008270
Trre11g00318 194 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 8 186 - -
Trre11g00318 194 ProSiteProfiles Zinc finger AN1-type profile. 97 147 IPR000058 GO:0008270
Trre11g00318 194 MobiDBLite consensus disorder prediction 172 194 - -
Trre11g00318 194 SUPERFAMILY AN1-like Zinc finger 6 59 IPR035896 -
Trre11g00318 194 Gene3D - 2 70 IPR035896 -
Trre11g00318 194 Gene3D - 78 154 IPR035896 -
Trre11g00318 194 ProSiteProfiles Zinc finger AN1-type profile. 10 58 IPR000058 GO:0008270
Trre11g00318 194 SUPERFAMILY AN1-like Zinc finger 95 141 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00318 Trre-Chr11 2516945 2518001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00318 1 173 C2H2 Transcription Factor Family AT3G28210 61.494 2.32e-75 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00318 - - aprc:113867149 320.472