Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00317 ATGGAGATTCACAAAAACACAAACAACAAATGGAGAAGTCCAAAAAAGCAAACATCATTAGAACCAATCTCAACAACAACAATAACACCAAAGATGAAATGGAAGAAGATGATGATTTTCTTCAACACAACAAAAACTACACAAAATCCACCTCAAGAATTTCTCTGCCCCATTTCTGGTTCTCTCATGTCTGACCCTGTAATTGTCTCCTCAGGCCATTCCTTTGACAGAATCTCCATTGAAGCTTGTAAAAATCTTAACTTTACCCCTCAACTTCAAGATGGCACCACCCCCAATTTCACAACCCTAATTCCCAATCTTAATCTCAAAACCTCAATTCTCAAATGGACCCAATCCCAAACCAAATTCCAAACAAACCCAAATCTCAAAACAACTGAAAACCTCGTACGAACATTAATTTCTTCAAAAAAACATCAAAAGCATCAAAACGACGTCGTATCAGAGAAAAACGACCAAGAAGAAGAAACACGACAAATCTCAATCTTAACACCACGAAAAACCTCGTACTCGAGCTCAGAGGAATCCATAGCTACTGCCACGTCATCATCTTCAACAACACCAAGACCGCAATATCAAAGTTTCTGTTACTCTTCACCTTCTTCATCTGAAATTGAACCTTCAACATCGCCAGAAGAAGAAGAAATCGTAACAAAACTCAGAAACCCACAACAGTTCATAATCGAAGAAGCATTAATCTCTCTCAGAAAAATCACAAGAACCAAAGAGGAAACAAGGGTTCAACTTTGCACGAACAGGGTACTTTGTTCTTTGCGTACGTTAATTTTGTCAAAAAACGAGGTTATAAGAGTCAACACTCTAGCTTCATTAGTCAACCTTTCTCTTGAAAAAGTCAACAAAGTGAAGATCGTACGGTCAGGAATTGTTCCACCGTTGATTGAGGTTTTGAAGTTTGGATCGTGTGAAGCGCAGGAACACGCTTCTTGTGTGTTCTTTAGTTTAGCGCTTGATGATGATAATAAAACTGCAATTGGTGTTTTAGGTGCTCTTTTGCCGTTGCTTCACGCACTTAAATCGGGGAGTGAGAGAACGCGCCATGACTCGGGTCTAGCGCTTTCTCATTTATCTTTAGTAAGGAGTAATAGGACTAGGATGGTTAAACTCGGATTTGTTTCGATTCTTTTAGGGATGGTTAAGTCGGGTTATATGATGGATCAAGCTTTGTTGATTTTGGGTAATTTGGGATTTGGGTCAGATGGTCGAGCTGCTATGTTGGATGCGGGTGTTGTGGAGTGTTTGGTGGGTTTGTTGGGTGGCACAGAGTTGAATTCAAAGTCAACGCGGGAAAGCTGTATTGGTGTTATGTATGCATTAAGTCACGGCGGGTTAAGGTTTAAGGCGGTGGCGAAGGAGGTTGGAGTTGTGGAAATGTTGGAAAAGATAGAGAAAATGAAGAGCGAGAAGGCTAATGAAAAGGTAAAGAGGATATTGGATATGATGAGTGAAAAGGAGGTGGAAGAGGAGGAGGTGGATTGGGAGGAGTTGCTTGACTCAGGGTTCAGTTGTCGACCTATGAGTCGGCAAGATAGTGGGTTGAACGTGACAAGTGTTAACTGA 1596 0.4085 MEIHKNTNNKWRSPKKQTSLEPISTTTITPKMKWKKMMIFFNTTKTTQNPPQEFLCPISGSLMSDPVIVSSGHSFDRISIEACKNLNFTPQLQDGTTPNFTTLIPNLNLKTSILKWTQSQTKFQTNPNLKTTENLVRTLISSKKHQKHQNDVVSEKNDQEEETRQISILTPRKTSYSSSEESIATATSSSSTTPRPQYQSFCYSSPSSSEIEPSTSPEEEEIVTKLRNPQQFIIEEALISLRKITRTKEETRVQLCTNRVLCSLRTLILSKNEVIRVNTLASLVNLSLEKVNKVKIVRSGIVPPLIEVLKFGSCEAQEHASCVFFSLALDDDNKTAIGVLGALLPLLHALKSGSERTRHDSGLALSHLSLVRSNRTRMVKLGFVSILLGMVKSGYMMDQALLILGNLGFGSDGRAAMLDAGVVECLVGLLGGTELNSKSTRESCIGVMYALSHGGLRFKAVAKEVGVVEMLEKIEKMKSEKANEKVKRILDMMSEKEVEEEEVDWEELLDSGFSCRPMSRQDSGLNVTSVN 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00317 531 Coils Coil 467 487 - -
Trre11g00317 531 Pfam U-box domain 51 120 IPR003613 GO:0004842|GO:0016567
Trre11g00317 531 SUPERFAMILY ARM repeat 221 495 IPR016024 -
Trre11g00317 531 MobiDBLite consensus disorder prediction 168 213 - -
Trre11g00317 531 MobiDBLite consensus disorder prediction 144 167 - -
Trre11g00317 531 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 137 IPR013083 -
Trre11g00317 531 SUPERFAMILY RING/U-box 45 119 - -
Trre11g00317 531 Gene3D - 215 492 IPR011989 -
Trre11g00317 531 ProSiteProfiles U-box domain profile. 49 123 IPR003613 GO:0004842|GO:0016567
Trre11g00317 531 MobiDBLite consensus disorder prediction 141 222 - -
Trre11g00317 531 SMART arm_5 410 453 IPR000225 GO:0005515
Trre11g00317 531 SMART arm_5 330 370 IPR000225 GO:0005515
Trre11g00317 531 SMART arm_5 289 329 IPR000225 GO:0005515
Trre11g00317 531 SMART Ubox_2 53 116 IPR003613 GO:0004842|GO:0016567
Trre11g00317 531 MobiDBLite consensus disorder prediction 1 25 - -
Trre11g00317 531 PANTHER U BOX DOMAIN-CONTAINING 44 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00317 Trre-Chr11 2507959 2509554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00317 51 520 U-box Gene Family AT5G40140 49.281 3.31e-143 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00317 - - lja:Lj2g3v1020040.1 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g00317 11 2507959 2509554 Trre5g02642 5 20749930 20751534 ECH
Trre11g00317 11 2507959 2509554 Trre11g00317 11 2507959 2509554 ECH
Trre11g00317 11 2507959 2509554 Trre13g00119 13 915519 920170 PCT