Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00302 ATGATTTTATTGGATGAGAGGCTTGATAGAATCCATGCAACAATTAGGAAGCATCTGATTTCAAAATTTAAGGATCAGATCAAGGAGGGAAAAGCTTATAACTTTGAGAGATTCATGGTGGCTAAGAATGATCCTACTTTTCAAGTTACTCCACATAAACATAAGTTGAATTTCATGAGAGGTACTAAGGTTTTTACAGTTCATGCCCCTGAGATACCAATGAACCATTTTGAGTTCATGCCATTTCCAGAAATTCTTGCTTCCACTAAAGAGGATCGTTACCTAGATGTTATTGGTCATGTGGTTGAAAAAACTGCCATGAAAGAGACTCAGAAGAATGGAAAGATTAATAAAGTTATGGATGCTACTCTTGAGGACTTGGAAGGGAACAGGGTGCATTGCACCCTATGGGATGAGTTTGCTTTTAAAATGCAGCAATTTTTAGACACACATGATCCAGCCCTGCCTGTTGTGATCATATTCCAGCTTTGCAAATTGAAGAAGTATCTTGGTTTTATGGGAATTTCAAACTCTTTTCATGGGTCTAAACTTTATTTGAATGCTGATCTTGCTGAAGCCACTAATTATATAGAAAGAATGAATGCTTCCAATGTGGAACTAACTCAGGGTGTAAGCCAAATGACTGGCCCAACTGTGATTAGTATTGCTGATGATTTGCTTCAGACTCCTAGAATGACCATCGAGGATCTTATAGAAGCGACTGAGAAATGTCATGGCTCTGTTTTAGCATGGACATGTGAATTTGCCACAGATGCAGGATGGTTTTACCAGGCCTGTACTAAATGTTCATCAAGAATTAGCTTTTTGGGTGGCCAACTCTATTGTGAAAAGTGTAGGCTACCAAGGACTGCAATACCTAAGTATAAAGTCCATTTGGAGGTCATTGATAATACTGGCTCCATAACTTTTGTACTCTTTGATCGTGTTGTCGCTCAAGTGATTGGGAGGACTGCGCAGGATCTGCTTGATTCTATCAATAATGAGGATCACAGGGATAAACCATTTCCTACACAATTGGATGTGTTTGTCAACAAGCGTGTGCTTTTTAAGGTGGAGCTGAGTGGTGACAATGAGTATGGTCTTGATGTTGGTGGAACTGATGCTCTTAATACTCTTGCTGATACTTCATTGGAAATAATCGAGGGAGTGGATTCAAGCGTTAATGAAGGCATTGTTGCTGTGGATGGTACTCACACTCCCAGTAGCAAGGTTATTGGGGAAAAGGATGCTGGATCCAGCGATGCTGGTGGGTCTGCTACTAAGAAGTTGTTTGTGAACATTGAAGATGATAACTTGGCTAATACCATGGATGCTCCAAGTACCAGATCAGCTGTGAAAAGATCTGCAAACTCTAATGAAGTTGAGGTGGCTGCTCCAAAGGAAGTTAAAATGGCCTGTGTTAAGAATTCCAATGTCAAGTGA 1443 0.4012 MILLDERLDRIHATIRKHLISKFKDQIKEGKAYNFERFMVAKNDPTFQVTPHKHKLNFMRGTKVFTVHAPEIPMNHFEFMPFPEILASTKEDRYLDVIGHVVEKTAMKETQKNGKINKVMDATLEDLEGNRVHCTLWDEFAFKMQQFLDTHDPALPVVIIFQLCKLKKYLGFMGISNSFHGSKLYLNADLAEATNYIERMNASNVELTQGVSQMTGPTVISIADDLLQTPRMTIEDLIEATEKCHGSVLAWTCEFATDAGWFYQACTKCSSRISFLGGQLYCEKCRLPRTAIPKYKVHLEVIDNTGSITFVLFDRVVAQVIGRTAQDLLDSINNEDHRDKPFPTQLDVFVNKRVLFKVELSGDNEYGLDVGGTDALNTLADTSLEIIEGVDSSVNEGIVAVDGTHTPSSKVIGEKDAGSSDAGGSATKKLFVNIEDDNLANTMDAPSTRSAVKRSANSNEVEVAAPKEVKMACVKNSNVK 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00302 480 PANTHER OS03G0429900 PROTEIN 2 460 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre11g00302 480 SUPERFAMILY Nucleic acid-binding proteins 229 363 IPR012340 -
Trre11g00302 480 SUPERFAMILY Nucleic acid-binding proteins 1 67 IPR012340 -
Trre11g00302 480 Gene3D - 224 369 IPR012340 -
Trre11g00302 480 CDD RPA1_DBD_C 260 364 IPR047192 -
Trre11g00302 480 Gene3D - 1 65 IPR012340 -
Trre11g00302 480 SUPERFAMILY Nucleic acid-binding proteins 76 203 IPR012340 -
Trre11g00302 480 Pfam Domain of unknown function DUF223 1 90 IPR003871 -
Trre11g00302 480 CDD RPA1_DBD_A_like 1 64 - -
Trre11g00302 480 Gene3D - 71 209 IPR012340 -
Trre11g00302 480 CDD RPA1_DBD_B_like 96 192 - -
Trre11g00302 480 Pfam Replication factor-A C terminal domain 257 359 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00302 Trre-Chr11 2425416 2427962 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00302 3 384 Core DNA Replication Machinery Family AT5G08020 24.190 3.60e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00302 - - tpra:123896123 540.806