Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00288 ATGTATGGGTTCGGTGGTGAGAAGTGGAAACACAATCGGCACATGTGGCCTGTTGTTACTTCTAACGCGACCACTGTAGTCACCGTTTCTTCACCGTCTCAATTTATATGCAAAGATGGACGCAAGATTCGTGTTGGTGACTGTGCACTTTTCAAACCACCCCAGGACTCACCTCCTTTTATTGGAATAATTCGCAAGTTAACATTCGATAAAGAAGAAAATCCTAGTTTAGAAGTGAATTGGTTTTACCGGCCTGCTGATTTGAAGCTCTCTAAAGGGATTGTAGTGGAAGCTGCACCTAACGAAGTCTTCTACTCCTTTCACAAGGATGAGATACATGCTGCATCATTACTCCATCCTTGTAAAGTCGCATTTCTCCGTAAAAGTGTTGAACTACCTTCAGGGATATCCGCATTTGTTTGTAGACGAGTGTACGACATTGACAACAATTGTTTACGGTGGCTAACTGATAAGGACTATATTAATGAACAGCAGGAAGAAGTTTACAAGCTATTAGATAAGACAAAACTAGAAATGCATGGGGCTGTGCAGTCAGGAGGCCGTTCTCCAAAACCCTTGAATGGTCCAACGTCAACACAGTCATTGAAATCTAGTTCTGATAACATTCAAAGTAGTTCTTCCTTTGGTGTACAGGGTAAGGGAAAAAAAAGAGAAAGAGGTGATCAGGGATCTGATTCATCCAAAAAAGAGCGATTATTTAAGGTAGAAGATGGAGATTCTGGTCAGTTTAGACCGGAGAGCATGCTAAGGTCTGAGATTGCTAAAATCACCGATAAAGGCGGGTTTGTGGACTTTGAAGGGGTTGAAAAATTTATACAGCTCATGCAACCTGACAGTGCTGATAAAAAAATAGATTTGGCTGGTCGAATCATGCTTGTTGATGTAATATCTCTCACGGAACGGAATGAATGTCTTGGCTGGTTCGTACAGCTCCGCGGTTTGCCTGTGTTAGATGAATGGCTGCAGGAAGTCCATAAGGGCAAAATTGGCGATGGCAATGTGGATAAGTCTGAAGAATTTTTGTTAGCTTTACTTCGTGCGTTGGATAAGCTTCCTGTGAATCTTCATGCACTACAAACCTGTAATGTTGGAAAATCTGTTAATAATTTACGTAGCCACAGAAATTCTGAAATTCAGAGGAAAGCCAGGAGTTTGGTAGACACATGGAAGAAGCGTGTTGAAGCTGAAATGAATATGACTGATTCAAAACCAGGTTCAACCCGTGCTGTTTCTTGGCCCGCAAAGCAATCGCAGTCAGATGTTTCTCACTCTGGTAATAGAAAAAGTGGAGGATCCTCGGAGCATGTTGCAAAGAGCTCTGCTATTCAACCTTCAACATCCAAAAATTCCCAATCTAAGCTTAATTCTGGAGAAGTAGTATCGAAGTTCACTTCATCCCCTGGCCCAACTAAATCGATGACTGCCTCAGTAAGCAGCAACTCGAAAGATCAAAATGTTAAACTCATTGTTGGTGCAACAACATCAGATCTACCTCTGACGCCTATCAAGGAGGAGAGGAGCAGCAGTTCTAGTCAATCTCAAAACAACAGCAGATCTTGTTCTAGTGAATATACGAAGACTATTGGTTCTTGCCGGGAAGATGCAAAGGGCTCCACAGCAGGGTCAATGAGTGTGGGCAAAGTTCATGGTGGTGCATCCCGGACTCGGAAGTCGAGTAATGGTGTACATGGTGCCGGTGTTTCTGTAGTTCAGAAGGATCATAGCTCTGCGAAGTTGAGAAATTCACCTTCTGATAAAATTTCCCCGACCCGAATGCCCCATGAAAAACCATCTGATCAACCCCTTGCCGATCAAGGGCATAATCAGCGACTGATTGTCAGGTTGCCGAACACTGGTCGCAGTCCTTCAAGGGGAGCTACCGGGGGCACTTTTGAAGAACCTGCAATTACATGTGGCAAAACATCACCTCCTTCCGACAAAAATGAGAATCAGGACAGGAGAGTTAAAGCTAAAACTGATTGTTTGCCGACCCATGTGTCAAATGTGATAAATGATGCACCCAATGATAATGAAACAACTTGTTGTGATGAAGCTAAGGGCTCTCCACCAGTGGATGAGCGGTGCAGGGCTAGTGAAGATGGGGATAAAGCAGCAGAAACGCCAAAAACAACCTCTTCTTCAACTGGATTTGTTTCCAGATCTGGGCATACTTATGACGCTTCTTTAAGCCCCATGAATGCGTTGGTCGAGAGCTGTGTGAAATTTTCCGAAGCAAGTTCCTCTGTTTCCCCGGGAGATGATGGGATGAATCTGCTTGCTTCCGTGGCTGCAGGAGAAATATCCAGATCTGAAAATGTCTCACCTCTGCCTTCACCCGAGAGGAAGTCTCCTGCAGCCGATGAATCAAGCACAGGGAATGATTCCAAATTAAGACGTTCTTTTGAAGCAGCTGCTCGTACTATTGGACAGTCTGATGGTGGGTCTACTGGAGATCATCCTCGGAATAATGTAGAGTCATTGCAATTCAAAAATGATTCTAGGCATCCTGTGACGACAATATCACGTGATGTTTCAGATGGTGAGGCCATTTCATCTAGTCGTTTGGAGAAAACTGGTGATGGCAAAACTCAAATAAACTTCTCTACTTCAGATGCGATACAGAATGCTGAAGGTCTGTGCTTACGGCCTGACATCAAAGAGGATACTTCTGAAGCTAGTTTTCCTGCTAGAAAGGAGACTCATGCAGAAACTGGAGGTGCAGAGCGTTTTCAGGAGCAGAGGGAATTGGGAACTCAATGGGCTAAAAACAGCAGTAGTTCAGGCTTCAAATTAAAGTCAAAGACTTCCTCGTTTGATGATGATCAGAAGATTGCTAACATGGAAGGTGGCACCGCAGAGCATGAGAATGGAAATGAACACGGGAAAAAATCCCCTGGGTTATCTTCAGGTGTAGATAATAAGAGCCAGAACAGTGCAGAGAAAGTGACAGGTATTCTTAGGCCTGTACAGAAAGGCTCTCCAGTTACAGATACATGCGAGTCCATGGATTTAAAAAGGGAGGATGTCGTGCCACCTGCTCCTGGTAATGTTTTGTCGGTATCTAGGGATGATAATGCTAATCATGTGATGCCAGTTGAGGTCAAGACTGATGCAAAACGAATGGATCTGGATTCAGCAGTTGCAGATGGTGTTAACGAACACACTCAAGAGAATTTTAGTAGAAAAGAGGTTATTGGCTCTGGATCATCAGCTCTCCCAGATGTACCAATTATTTCTGAAAAAGACAACGAAGTGCCCAAAACATGTGATTCTAATCTCGAAAGAAAAAAATCTGTAGATACTGTAGAGTTGAATGCGGGCAATGCTATTCCATCCCCAATTGCTTGCGGTTCTGATGCAGCTGTAAAACTGGACTTTGATTTAAATGAGGGATACCCCGTTGAAGATGTTGCTCAAGCGGACATTGTTAGAACAGAAGAACCTACCAGTTCATCTGCAGTTCATGTTCCTTGCCCGTTGCCTTTTCCCATTCCGTCCATCTCTGGTTCCTTCCATGCTTCAATTACAGTGGCTTCTGCTGCTAAAGGGCCGGTTGTTCTACCAGAAAATCCATTGCGGAGTAAGGGGGAACTTGGATGGAAAGGCTCAGCTGCTACAAGTGCATTCCGACCAGCTGAACCTAGGAAAAATGCTGAGATGCCATCAAATACTGTTGATATTCCTTCTGTTGACGCCACCTCAGTTAAAAAAGGCCGCGCTCCTTTAGATTTTGATTTAAATGTTGCAGATGAAGTAAGTTTCGAGGATGTAACTTACCGGGGTGCCTTAGAGTCTGGAACACATGACCGCAACACTGTGGGGCTTGATCTTGATCTTAACAGGTTAGATGAGACTCCTGAAGTTGGATCTTTCTCTATGGGTAAAGTGGATATTCCTTCTCTACCATGTAAACAACCTTCATTGTCCAGTGGGTTATCTAATGGTGGAAGTGTCTCAAGAGACTTTGATTTAAATAATGGGCCAGGCCTCGATGAAGTTAGCACTGAAGTCCCAGCTCGTAGTCTGCAGATGAAAAATACTGTGCCTTTTTCAAATTCTGTTCATGGTTCGAGAACAACTAATGCTGAATTTGGGAATTATTCTTCATGGTTTCCTCCGGGCAGTTCGTATTCTGCAATTACGGTCCCGCCACTTCTGCCTGGTAGGGGGGAGCAGAGTTATGTTGGTGGTTCTGGGGCACAGCGGATCATCGGCTCCACTGGTAGCACACCTTTTAATCCTGAAATGTACAGAGGACCAGTACTTTCATCCTCTCCAGCTATTGCATATCCACCTACTACCCCATTTCCATATCCAGGATTTCCATTTGAAACAAATTTTCCATTATCTTCAAACACTTTTTCTGGTTGTTCAGCGCCGTTTATGGATTCATCAACTGTTGGTGGACTTTGCTTTCCTACTATGCCCTCACAGCCAGTTGGGCCTGGTGGAGTTGTCTCGTCCACATTTCCCCGTCCATATGTTATGAGTCTCCCAGGTGGTACAAGTAATGTAATTCCCGACAGCAGAAAATGGGGAAGTCAGAGTCTGGATCTAAATTCAGGCCCTGGTGGTGCAGATACAGAGCGCAGAGATGACAGAATGCCTTCAGGATTGAGACAGATGCCTGTCCCCAGTCAACAAGCCTTGATGGAGGATCACTTGAAGATGTTTCAGATGGCCGGTGCATTAAAAAGAAAAGAACCTGATGGTGGTTGGGATGGAACTGATAGATTCAGTTACAAACATCCCTCATGGCAGCAGTAG 4788 0.4426 MYGFGGEKWKHNRHMWPVVTSNATTVVTVSSPSQFICKDGRKIRVGDCALFKPPQDSPPFIGIIRKLTFDKEENPSLEVNWFYRPADLKLSKGIVVEAAPNEVFYSFHKDEIHAASLLHPCKVAFLRKSVELPSGISAFVCRRVYDIDNNCLRWLTDKDYINEQQEEVYKLLDKTKLEMHGAVQSGGRSPKPLNGPTSTQSLKSSSDNIQSSSSFGVQGKGKKRERGDQGSDSSKKERLFKVEDGDSGQFRPESMLRSEIAKITDKGGFVDFEGVEKFIQLMQPDSADKKIDLAGRIMLVDVISLTERNECLGWFVQLRGLPVLDEWLQEVHKGKIGDGNVDKSEEFLLALLRALDKLPVNLHALQTCNVGKSVNNLRSHRNSEIQRKARSLVDTWKKRVEAEMNMTDSKPGSTRAVSWPAKQSQSDVSHSGNRKSGGSSEHVAKSSAIQPSTSKNSQSKLNSGEVVSKFTSSPGPTKSMTASVSSNSKDQNVKLIVGATTSDLPLTPIKEERSSSSSQSQNNSRSCSSEYTKTIGSCREDAKGSTAGSMSVGKVHGGASRTRKSSNGVHGAGVSVVQKDHSSAKLRNSPSDKISPTRMPHEKPSDQPLADQGHNQRLIVRLPNTGRSPSRGATGGTFEEPAITCGKTSPPSDKNENQDRRVKAKTDCLPTHVSNVINDAPNDNETTCCDEAKGSPPVDERCRASEDGDKAAETPKTTSSSTGFVSRSGHTYDASLSPMNALVESCVKFSEASSSVSPGDDGMNLLASVAAGEISRSENVSPLPSPERKSPAADESSTGNDSKLRRSFEAAARTIGQSDGGSTGDHPRNNVESLQFKNDSRHPVTTISRDVSDGEAISSSRLEKTGDGKTQINFSTSDAIQNAEGLCLRPDIKEDTSEASFPARKETHAETGGAERFQEQRELGTQWAKNSSSSGFKLKSKTSSFDDDQKIANMEGGTAEHENGNEHGKKSPGLSSGVDNKSQNSAEKVTGILRPVQKGSPVTDTCESMDLKREDVVPPAPGNVLSVSRDDNANHVMPVEVKTDAKRMDLDSAVADGVNEHTQENFSRKEVIGSGSSALPDVPIISEKDNEVPKTCDSNLERKKSVDTVELNAGNAIPSPIACGSDAAVKLDFDLNEGYPVEDVAQADIVRTEEPTSSSAVHVPCPLPFPIPSISGSFHASITVASAAKGPVVLPENPLRSKGELGWKGSAATSAFRPAEPRKNAEMPSNTVDIPSVDATSVKKGRAPLDFDLNVADEVSFEDVTYRGALESGTHDRNTVGLDLDLNRLDETPEVGSFSMGKVDIPSLPCKQPSLSSGLSNGGSVSRDFDLNNGPGLDEVSTEVPARSLQMKNTVPFSNSVHGSRTTNAEFGNYSSWFPPGSSYSAITVPPLLPGRGEQSYVGGSGAQRIIGSTGSTPFNPEMYRGPVLSSSPAIAYPPTTPFPYPGFPFETNFPLSSNTFSGCSAPFMDSSTVGGLCFPTMPSQPVGPGGVVSSTFPRPYVMSLPGGTSNVIPDSRKWGSQSLDLNSGPGGADTERRDDRMPSGLRQMPVPSQQALMEDHLKMFQMAGALKRKEPDGGWDGTDRFSYKHPSWQQ 1595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00288 1595 MobiDBLite consensus disorder prediction 923 940 - -
Trre11g00288 1595 SMART BAH_4 41 156 IPR001025 GO:0003682
Trre11g00288 1595 MobiDBLite consensus disorder prediction 507 535 - -
Trre11g00288 1595 Pfam BAH domain 42 147 IPR001025 GO:0003682
Trre11g00288 1595 MobiDBLite consensus disorder prediction 1210 1233 - -
Trre11g00288 1595 CDD TFIIS_I 332 401 - -
Trre11g00288 1595 MobiDBLite consensus disorder prediction 975 990 - -
Trre11g00288 1595 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 275 404 IPR035441 -
Trre11g00288 1595 MobiDBLite consensus disorder prediction 714 728 - -
Trre11g00288 1595 Pfam TFIIS helical bundle-like domain 351 400 IPR017923 -
Trre11g00288 1595 MobiDBLite consensus disorder prediction 504 662 - -
Trre11g00288 1595 MobiDBLite consensus disorder prediction 402 488 - -
Trre11g00288 1595 SMART TFS2_5 328 402 IPR003617 GO:0005634
Trre11g00288 1595 MobiDBLite consensus disorder prediction 190 218 - -
Trre11g00288 1595 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1594 - -
Trre11g00288 1595 MobiDBLite consensus disorder prediction 816 842 - -
Trre11g00288 1595 MobiDBLite consensus disorder prediction 180 251 - -
Trre11g00288 1595 MobiDBLite consensus disorder prediction 407 488 - -
Trre11g00288 1595 ProSiteProfiles BAH domain profile. 41 156 IPR001025 GO:0003682
Trre11g00288 1595 MobiDBLite consensus disorder prediction 775 803 - -
Trre11g00288 1595 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 311 413 IPR035441 -
Trre11g00288 1595 MobiDBLite consensus disorder prediction 1513 1529 - -
Trre11g00288 1595 MobiDBLite consensus disorder prediction 895 917 - -
Trre11g00288 1595 MobiDBLite consensus disorder prediction 815 872 - -
Trre11g00288 1595 MobiDBLite consensus disorder prediction 694 713 - -
Trre11g00288 1595 MobiDBLite consensus disorder prediction 676 728 - -
Trre11g00288 1595 ProSiteProfiles TFIIS N-terminal domain profile. 322 403 IPR017923 -
Trre11g00288 1595 MobiDBLite consensus disorder prediction 618 632 - -
Trre11g00288 1595 MobiDBLite consensus disorder prediction 1513 1547 - -
Trre11g00288 1595 MobiDBLite consensus disorder prediction 219 250 - -
Trre11g00288 1595 Gene3D - 25 249 IPR043151 -
Trre11g00288 1595 MobiDBLite consensus disorder prediction 895 1005 - -
Trre11g00288 1595 MobiDBLite consensus disorder prediction 581 595 - -
Trre11g00288 1595 MobiDBLite consensus disorder prediction 1573 1595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00288 Trre-Chr11 2309324 2315515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00288 275 398 Homeobox Transcription Factor Family AT4G02560 27.559 9.47e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Trre11g00288 BAH 7.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00288 - - gmx:112998769 2234.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g00288 11 2309324 2315515 Trre11g00288 11 2309324 2315515 ECH