Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00287 ATGACCTCTCTACCATCTTATAATGCAAAAGAATTAGACAAGAGGGGATTTCAGACTCCACTTCTACGGGCTATTAATGCGAGCTTCGTCTATCCAAACCGAGAGGATTTCAGACTCTCAAATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCTAATGGAGCCGGAAAATCTACACTGCTAAATCTTCTAGCCGGTGTTTTGAATCCAACGGAAGGTGAAGTTGTAAGGAATCCGAAGTTGAGAATATGGAGATACTCCCAACATTTTGTGGACCTACTGACGATGGACGAAACACCTGTTCAGTACCTCCTTCGCCTCCACCCAGACCAGGAGGGACTTAGTAAGCAGGAGGCTGTCCGTGCAAAACTTGGAAAATTTGGGCTACCTGGTCATAATCATCTTACCCCCATTGTCAAACTATCAGGAGGGCAGAAATCTCGGGTCGTTTTCACGTCGATATCCATGTCAAAACCTCACATTTTATTGTTAGATGAACCCACAAATCATCTGGATATGCAAAGTATTGATGCATTGGCCAATGCGCTGGATGAATTCAAAGGTGGAGTTATTCTTGTTAGTCACGATTCTAGATTGATATCACGCGTCTGTGATGATGAAGAAAAGAGTCAAATTTGGCTTGTTGAGGATGGCACTGTCAGAATTTTCCCTGGAACTTTTGAAGATTACAAGGAAGATTTGCTGAAAGAGATTAAAGCTGAAGTTGATGATTGA 750 0.4293 MTSLPSYNAKELDKRGFQTPLLRAINASFVYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGVLNPTEGEVVRNPKLRIWRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPGHNHLTPIVKLSGGQKSRVVFTSISMSKPHILLLDEPTNHLDMQSIDALANALDEFKGGVILVSHDSRLISRVCDDEEKSQIWLVEDGTVRIFPGTFEDYKEDLLKEIKAEVDD 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00287 249 Gene3D - 6 248 IPR027417 -
Trre11g00287 249 FunFam ABC transporter F family member 4 12 249 - -
Trre11g00287 249 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 17 243 - -
Trre11g00287 249 Pfam ABC transporter 39 174 IPR003439 GO:0005524
Trre11g00287 249 CDD ABCF_EF-3 22 224 - -
Trre11g00287 249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 22 247 IPR003439 GO:0005524
Trre11g00287 249 SMART AAA_5 48 238 IPR003593 GO:0016887
Trre11g00287 249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 234 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00287 Trre-Chr11 2297462 2298211 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00287 29 225 Calmodulin-binding Proteins AT2G36910 27.907 4.00e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00287 K06184 - lja:Lj6g3v0521710.1 410.994