Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00280 ATGTCTTCTTCTTCCGACGAAGGTTACGCGATCGAACTGTACATGGATCCAGCACTCGAAAACCAAGTCCTCAAAGCATGGAACGTTCTAGCTCGCCGTCAAATCAGTACCGAACTAATCGAAATCGGTTCACGACCACACATCACACTTTTCTCAACTCCTTACCTTCTCGAACCTTCCAAACTTGAATCTATTCTCAAAACCCTAACTTCCAAATTCGATCCATTTTCTCTTTCTTTCTCTTCAATCTCTTCTTTTTCCAATGATAACAACACTCTATTTCTCTCACCTACTCCTTCAATCTCTCTTCTCAATTTTCACTCCAATTTAGTTGATTCCATTGTTAAAGAAGGAATCGAGGTTTCTGATGAATTTGCGGTTGGAAATTGGATTCCTCATTGTGAAGTTGCGAATCATGTTCCGAAATCGAGAATTGCTGAAGCTTTTACTCTTCTTAGAGATCTTAAATTGCCTGTTACTGGTTATGCTGTTGATGTTGCTCTTGTTCAATTCAATCCGATTATCTCCTTTGTGCTTGGTAACAAAATCATCGCGGATTCCTAA 564 0.3954 MSSSSDEGYAIELYMDPALENQVLKAWNVLARRQISTELIEIGSRPHITLFSTPYLLEPSKLESILKTLTSKFDPFSLSFSSISSFSNDNNTLFLSPTPSISLLNFHSNLVDSIVKEGIEVSDEFAVGNWIPHCEVANHVPKSRIAEAFTLLRDLKLPVTGYAVDVALVQFNPIISFVLGNKIIADS 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00280 187 Pfam 2'-5' RNA ligase superfamily 45 170 - -
Trre11g00280 187 SUPERFAMILY LigT-like 2 156 IPR009097 -
Trre11g00280 187 Gene3D Cyclic phosphodiesterase 9 181 - -
Trre11g00280 187 PANTHER - 6 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00280 Trre-Chr11 2257430 2260556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00280 7 183 Calmodulin-binding Proteins AT5G40190 60.556 1.30e-71 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00280 - - mtr:25495217 257.299