Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00272 ATGACAAGAAGATGGTCCTTTTACATGGATTTTTTGCCAGTTGTAGTGATTATAGGAAATGAATTTATTGACATGGGTTTACTCACTTTGTTCAAAGCAGCAACACTACAAGGAATGAATAATCATGTCTTTATAGCTTATGCTTATGCTGTTGGTACTTCTGTTCTTCTCCCTGTCACTCTTTTCACTAGAAGATCAAGAGTGGCTCCTCCAATCAGTTTCTCAATTATATGCAAAAGTGTGCTTCTTGGTACACTAGGATGCACATCTCAGATTTTGGGGTATATTGGTATTAGTTACAGTTCTCCAACACTTGCTTCAGCAATTGCTAATCTGATACCTGCTTTCACTTTCATGTTAGCTGTTACATTCAGGATGGAAAAGTTATCTGCAAAGAGTAGAAGTAGTAATGCAAAGGTAATGGGAAGCATAATCTCAATAGCAGGTGCTTTTGTGTTGACTTTCTACAAAGGACCACCCATCTTGCAATCCTCCTATACTCATATTTCCTCACCACTTCATCAACCACTTGAATTTCTCAAGTCAGTGGATTCAAGTTGGGCTATTGCTGGCGTTCTGCTAACAATCGACTATTTTATGGGTTCAATATGGTACATTTTACAGGTACATATCTTGAAAGAGTTTCCAGATGAACTAACATTAGTCTTGTTATACTCCATAGCTGCCACAATCATATCAACAGTAGTAGCTTTGTTATCAGTTCCAAATTCAAGTGCTTGGAAAATAGGACTAAATCTCTCATTGATCTCCATTGTTTCTTCTGGCATTTTCGGAAAGTTAGTAGGAAATATAGTTTCTGCATGGGCATTGCACTTAAAGGGAGCTGTCTATGTAACCTCATTCAAGCCGCTACAAATTATTATTTCGGTTGGCTTGGGAATTATATTTCTTGGTGATACTCTTTGTTTAGGAAGTATAATTGGAGCAACAATAATCTCGATTGGCCTTTATGGTGTATTATGGGGCAAAGCATCAGAAGAGATAGAGGAAGATGTTGGTATCTTGGAGTCACCATCTACAGAGAATGCACCTCTTTTGCAAAGCTATAGAACTGATCAAACTTTCGAAAAGACAAAAGATGGAAATGTTTAA 1113 0.3738 MTRRWSFYMDFLPVVVIIGNEFIDMGLLTLFKAATLQGMNNHVFIAYAYAVGTSVLLPVTLFTRRSRVAPPISFSIICKSVLLGTLGCTSQILGYIGISYSSPTLASAIANLIPAFTFMLAVTFRMEKLSAKSRSSNAKVMGSIISIAGAFVLTFYKGPPILQSSYTHISSPLHQPLEFLKSVDSSWAIAGVLLTIDYFMGSIWYILQVHILKEFPDELTLVLLYSIAATIISTVVALLSVPNSSAWKIGLNLSLISIVSSGIFGKLVGNIVSAWALHLKGAVYVTSFKPLQIIISVGLGIIFLGDTLCLGSIIGATIISIGLYGVLWGKASEEIEEDVGILESPSTENAPLLQSYRTDQTFEKTKDGNV 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00272 370 PANTHER WAT1-RELATED PROTEIN 12 343 IPR030184 GO:0016020|GO:0022857
Trre11g00272 370 Pfam EamA-like transporter family 25 154 IPR000620 GO:0016020
Trre11g00272 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 237 331 - -
Trre11g00272 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00272 Trre-Chr11 2187868 2190924 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00272 1 360 Nodulin-like Gene Family AT3G28050 46.649 6.82e-111 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00272 - - tpra:123906528 676.781