Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00264 ATGTCAGAAACTATGTATCCTAAATTGTTATTTGAACATACCCATTTGAGAATGTCTTTGATTAATCATCAAATCTATCAAAAAGATGGTTACTTTATGAATTTTCCACCACCATCACCATCATCACTATCATCACCAATACAATCTTCATCAAGTTCTTCAACACCAACAACTCCAACACCATCTTCATCTTCTAGTACTAAGATTAGTCCAGCTGTTCTTTTCATCATAGTTGTTCTTGCAGTTCTGTTCTTCATATCTGGTTTACTTCATTTACTTATTAGATTTCTTATCAAGAATCCATCTTCATCTAATTCTACATCTAATAGACAACATCATAATGAAATTTCAACTTCTGATGCACTTCAAAGACAGCTACAACAGCTTTTTCATCTACATGATTCTGGTTTAGATCAAGCTTTCATTGATGCACTACCTGTTTTTCAATTCAAAGAAATTGTTGGTTTGAATGAACCTTTTGACTGTGCTGTTTGTTTGTGTGAGTTTACTGAGAAAGATAAGTTAAGATTGTTACCTATGTGTAGCCATGCTTTTCATATAAGTTGTATAGATACTTGGCTACTTTCAAACTCAACTTGTCCTCTTTGTAGAGGAACACTTCAAACTCATGGATTTTCGATTGAAAATCCGATGTTCGATTTCGATGATATTAGAGAAGATGGTGATTTTCCTTGTAATGGAGAGAATGGATTTGGTAATAGACAAAAAGAAATTGTAGTTGATGAAGTTGTCGATAAAGGGGTTTTGCCAGTTCGACTGGGGAAATTCAAGAAGATGAATGCGGAAGCGGGTAGAGAGAACGAAGAAGTAGGTGAAACGAGTAGTAGTAATTTGGATGCAAGAAGATGTTTTTCAATGGGATCTTATCAATATGTTGTTGGAAATTCCGAGTTAAGGGTAGCCTTAAATCATGATAGTAGAACTCATAATGATATAAGGGTTAACAAAGGAATGGAAAATGTTAAGAATCTTTGTGTGGAGAGTGATTTGGAAGGAAAGAAAATTAGTAATGTTAGTAAAGGTGAAAGTTTTTCTATTTCTAAGATTTGGTTATGGCCAAGGAAAGGAAAATTTTCTTCAAGTTCTTTAGAAGCTAATAATGGAATGGCATTGCCATCTTATCTTAACAAAGATTTGCAGCAGCATGGGATGAAGGAAACAGATGGTGTATGA 1194 0.34 MSETMYPKLLFEHTHLRMSLINHQIYQKDGYFMNFPPPSPSSLSSPIQSSSSSSTPTTPTPSSSSSTKISPAVLFIIVVLAVLFFISGLLHLLIRFLIKNPSSSNSTSNRQHHNEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQFKEIVGLNEPFDCAVCLCEFTEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLQTHGFSIENPMFDFDDIREDGDFPCNGENGFGNRQKEIVVDEVVDKGVLPVRLGKFKKMNAEAGRENEEVGETSSSNLDARRCFSMGSYQYVVGNSELRVALNHDSRTHNDIRVNKGMENVKNLCVESDLEGKKISNVSKGESFSISKIWLWPRKGKFSSSSLEANNGMALPSYLNKDLQQHGMKETDGV 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00264 397 MobiDBLite consensus disorder prediction 44 67 - -
Trre11g00264 397 MobiDBLite consensus disorder prediction 38 67 - -
Trre11g00264 397 SUPERFAMILY RING/U-box 141 209 - -
Trre11g00264 397 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 64 357 - -
Trre11g00264 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 211 IPR013083 -
Trre11g00264 397 CDD RING-H2_EL5-like 161 204 - -
Trre11g00264 397 FunFam RING-H2 finger protein ATL46 124 209 - -
Trre11g00264 397 SMART ring_2 162 203 IPR001841 -
Trre11g00264 397 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
Trre11g00264 397 Pfam Ring finger domain 161 204 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00264 Trre-Chr11 2142141 2143334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00264 60 369 C3H Transcription Factor Family AT2G18650 40.000 1.46e-56 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00264 - - gmx:100787206 496.123