Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00256 ATGTATAAAATCCAATTGACTTTATGGATTCTGATTGGAGCAGCAACAATAGGAGTTACTTTGGTAGCATTTATCACTGCATACATCATTTATGTTAGATTCTTCAGATCAGCCTCACTACAAAATGAAGTGACATTTGGAAACTTGTTAAAGAAAATTTCTTGTCCAAAAATTCCTATCAAGGAAGTGTATGCTGCCACCAACTATCTCAATGAAATGAATATCATTGGAAAAGGAACTTCAGGTAAAGTCTATAAAGGTACAATGAAAAATAATCAACAAGTTGCAGTGAAGCACATAATCAATGAAGATGGAAATATACAAACTTTTGTTAGAGAAGTTACAAGTTTATCTCATATCATGCATCCAAATCTTGTTTCTTTGCTTGGTTGTGCTGTTGAGGGAGATGATTGTTTTCTAATCTATGAATTATGTCACAATGGAAGCCTTTCAGAATGGCTTTTTGGCAAGAACAAGGTGCTTTCATGGATAAAGAGGCTAGAAATTGCGATTGATAGTGCTCGAGGTCTTTGGTTTTTGCACACATATCAAGGAGGCTGTATAGTTCATCGCGACATCAAGCCAACAAATATCCTTCTAGGGTCAAAATTTGAGGCAAAGCTATCAGATTTTGGATTATCTAAAGTTATTGAGATAGGTGAAACATATGCTAGTTCAGAAGTGAGAGGAACTTTTGGATATGTGGATCCTGAGTACCAAAGCAATCACCATGTCAATTCATCTGGTGATGTTTATAGTTTTGGCATAGTTCTTCTACAAATTATCTCTGGGAAGAGAGTCATAAATTTGAAATTAAAGAGGCCAATGTCACTTAGTAAAATGGCAAAAGCATTTACTAGGAATGGAGCATTACAGAATTTGCTGATCCTAGACTCCAAGGAAATTATTGGGAGGAAGATTTTTACTAAAGAAATTCTAGAAGACCTTAATATTCCTAATGGTCCATGA 969 0.3498 MYKIQLTLWILIGAATIGVTLVAFITAYIIYVRFFRSASLQNEVTFGNLLKKISCPKIPIKEVYAATNYLNEMNIIGKGTSGKVYKGTMKNNQQVAVKHIINEDGNIQTFVREVTSLSHIMHPNLVSLLGCAVEGDDCFLIYELCHNGSLSEWLFGKNKVLSWIKRLEIAIDSARGLWFLHTYQGGCIVHRDIKPTNILLGSKFEAKLSDFGLSKVIEIGETYASSEVRGTFGYVDPEYQSNHHVNSSGDVYSFGIVLLQIISGKRVINLKLKRPMSLSKMAKAFTRNGALQNLLILDSKEIIGRKIFTKEILEDLNIPNGP 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00256 322 ProSiteProfiles Protein kinase domain profile. 70 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00256 322 Gene3D Phosphorylase Kinase; domain 1 33 144 - -
Trre11g00256 322 SUPERFAMILY Protein kinase-like (PK-like) 53 269 IPR011009 -
Trre11g00256 322 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Trre11g00256 322 ProSitePatterns Protein kinases ATP-binding region signature. 76 98 IPR017441 GO:0005524
Trre11g00256 322 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 10 303 - -
Trre11g00256 322 Gene3D Transferase(Phosphotransferase) domain 1 145 314 - -
Trre11g00256 322 Pfam Protein kinase domain 72 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00256 322 SMART serkin_6 70 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00256 Trre-Chr11 2047697 2050184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00256 54 295 Receptor kinase-like Gene Family AT5G59700 41.057 4.87e-52 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Trre11g00256 Pkinase 3.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00256 - - mtr:25495195 525.013