Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00253 ATGGAAGTTTTTATAAATATAAGTATAGTACTAGTGTTTTTGGGCATGGTGTTCTTGGTCCTATTGCAAGCATGTTCTTATGGAAGAAGCATTGAAAGAAGCATTTCCAAAACTGATTTGGAGAAGCTTCCATGTAATGATTATGTTGCAAAAGAAAATAGAAGTAACTCTTTGGAATGTGCAATTTGCTTGGAGAATTTTACAATTGGTGATAAGTGTAGATTATTGCCTATTTGTAAGCATAGTTTTCATGCTAAATGTGTTGATAAATGGCTTTTGAAGAATTCACTATGTCCAATTTGTAGATCTAGGGTTTGTATTCTTTGTGCTAACAAAGTTGTTTTAGGTAACAATGGAAGAGAAAGCTCATCTCGAAATGTTGGTATAGAATTACGAGAAAATAATCCAACATTAGAAGTAGAATCACAAGAGCAATAA 438 0.3219 MEVFINISIVLVFLGMVFLVLLQACSYGRSIERSISKTDLEKLPCNDYVAKENRSNSLECAICLENFTIGDKCRLLPICKHSFHAKCVDKWLLKNSLCPICRSRVCILCANKVVLGNNGRESSSRNVGIELRENNPTLEVESQEQ 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00253 145 SUPERFAMILY RING/U-box 50 108 - -
Trre11g00253 145 ProSiteProfiles Zinc finger RING-type profile. 60 102 IPR001841 -
Trre11g00253 145 Pfam Ring finger domain 59 102 IPR001841 -
Trre11g00253 145 SMART ring_2 60 101 IPR001841 -
Trre11g00253 145 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 108 IPR013083 -
Trre11g00253 145 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 33 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00253 Trre-Chr11 2042786 2043223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00253 17 102 C3H Transcription Factor Family AT2G17450 39.785 9.89e-19 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00253 - K15706 mtr:25495193 194.126