Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00249 ATGGAACTCCCCGATTCCACCGCCGGTAGTAACAACAACCTCAACAACAACATACCTCCGCCGCCGCAACAACCACCACCACAACCACCGCCGCTTAACAACCACCAAGACACTCGTTCTATTCTCTGCATCGACCTCAACGAGATCCCTTCACCTTCTTCTTCATTCCCCGAAACCCTACTTGACTCAACAATCGACATCGTTCGTACCTATCACGAGAATCCCGCTCCACCTCCCGGTGGTCCTGCTGCTCTTCCTACTGGTACAACTGCCTGCGTCGTTTGTGCTAAATCCTCATCCTCCTCCGGCGGTGGTGGTAATTGTTTAGTTTGTGACGGCTGCGAGCGGAGTTTTCACTTGGCTTGTGCCGGGATTCGAGGCGGCGGTGGTCGACAGGGTGCTGCGAGTATAGGAGAGTGGGTGTGTGGTGAGTGTTTAGCTGGTGGTGTGAAGAGTAAACGGTGGCCGTTGGGTGTGAAGTCGAAGCAGCTTCTTGATATCAATGCTTCACCGCCTAGTGATGTTGATGGGGAGGAGTTGCATGATGCGAGAAAGGACACCATGGGTGATAAATCTCTTGCTGCCAATCAATTCGGTGCTCCAGTGACATATTCGACATTCAACAATGGGAGTGTCTTTGACTTCCAAAGGGCATCTGGAGCTGTGACACATGCTGTAAGAGTAGGTTATGAGGATATACTGAATCACACCCAATCAATGGCCAGAAGCTTTGCGGCATTACAATCTCAGACTCAGAGTCCAAATGAGTTGGTTTTGCGGGCTCTTAGAGATTTTATTTCTGAACGGCATGGCGTACTGGAGGATGGTTGGCGAGTGGAGCTTAGACCATCAACGATCAGCTCTGACCTGTATGCTATATATTGTGCACCTGATGGAAAAATCTTTGATTCTGTGTATGAAGTAGCTAATTATCTGGGGCTACCGTCTGGCTACAATTTGATGGAATCGGAAACAAGAAATGAAATGTCTCTTTCTATAGGCGGGCCTCACCTATCCAGAAAAAGGAAGTCTTCTAGGACTCTGGCAGCCAATGGTTTTAAGGATTGTTCTTATGATTTAAGTATGGAATGTGACAATGCTCAGGGGACTGTCCCAAAAGCCACTGAGATTGGAAGAAAAGAGAATGGTCACTCCAACCCTCATCAATCCGCTGATGGACTTCCTGTGCAGTTTAAGGACTTCTATGTTCTTTCTTTGGGAAAAGTTGATGGGAGACCTTCATATTATGATGTTAACCTTATCTTTCCTGTGGGCTATAAATCTTGTTGGCATGACAAGATTACCGGCTCTCTTTTTACTTGTGAAGTTTTGGATGGGGGTGATTCTGGACCTATATTTAGGATTAAAAGGTGTTCATGTTCAGAATTTCCTATTCCAGATGGGTCAATCAGCCTTTCAATGCAAAGTAATTGTCCATTTGTGAGTGAAACCAATGAAGGTCAGAGAGAGACTCATGAAAGTATGGATTTAGATGGTGATGAGAGTATCCAGATGCTGCTTTTAGAACCTTGTGCACCAACAGAAAACGACATCTTGAGTTGTGTTGCCAGTTTTTCAAATGAAGCATATGCATCAGAAGGATTAAGGCCAGTTGCTGGTTCACTTCAAGATATTGCTGGAAATTCATTTGCTGATAATATGAATTTTAGTGATGAAATTGGTGAAATTTTGGTGGAAGAGCAGTCCCTATCCTCAGCATGGAGAGTTATTTCTCAAAAGTTAATCAATTCTTGCAAGGATATCTGCAAGAAGAAAGGAAGTCTTAAATTCTATTGTAAACATGTTGAGAGTGAAATGGGCTTATGGGATTTAAGGAATGGAAAAAGTGATACGCACTTCCCTTCATTGGATAAATTTTGTGGTTCACCTGTTTCTGTCAGCATTCCAGATACAATTTATGCAGACAAGGATCTGAATGGCTTGTATGAGCTGTTAGAGAAATGGTTGGAGCAGGATAGATTTGGATTAGATGCTGAATTTGTGCAAGAATTATTGGAAATGAATCTTGGTGTGCAAGACTCTTTTCAATATGAACTTCTGAGTAGTAGAAATAATAGTTCTTCATTGCCAACAGTGGACAATGGTTTCCTAGTGGTCGAATATAAAGGTCAATCAAAATATCAGGATGAAGAAGAAGCAATTCAAGGTTTATATAGAAGGTCTAAGAAGGCAAGATTGACTGAAAAATACGTTAAGGAAGACCGATGTCCACCTCCTGGGAAACCACTGTGCTCTAGGGCTCCTACTGAACTCATCAGTGACATTTTTCAGGTTTGGGAGCTTTTAGAGCGGTTTCGTGAAATTCTAGAACTGAAAGAACCATTGTTATTAGAGGAGCTTGAGAAGGAACTTATCAACCCATGGTTTGATGAATTAGATTTCCCTGAGAAATCTGAGAGGGGAATGGGTGGAAGTCAAGTTTTAACTTCACAATGGGGTGATGGTGATTGCCGACTAATATGTGAAACTGGTCCATCAGGTTCCACAGGAAGTTCTTTTATTCAAGTGGAAACAGAAGCAATGAAAGAGGAAGCCCAAGTTAAGCTCGCATCTTTCACCTATGTCAGATGCTTTGGTGTAGCTTTGACCAAGGCCCATAATTCATTACTAAGAGTGCTAATAGGTGAACTGCAATCAAAGGTGGCCGCTTTGGTGGATCCGAATTCTGAACCCGGAGAGACTCGGACAAGACGTGGGAGAAGGAAAGATATAGATAGTGCAGTTCCTGCCAAACGAACCAAGGTCAATATGCTTCCTATCAATGAATTGACATGGCCAGAACTAGCTCGAAGATATATCTTGGCTTTCTTATCAATGGATGGTAACCTTGAGTCTGCGGAAATTACTGCCCGTGAAAGTGGCAAAGTATTTCGTTGCTTACGAGGCGATGGTGGTTTGCTGTGCGGTTCCCTTACTGGCGTGGCTGGGATGGAAGCTGATGCACTGTTGCTTGCGGAGGCTACGAAGAAGATTTTTGGTTCCTTGAGCAGAGAAAATGATGTACTCATCATAGAAGAAGAGGAGTCTGATGCTAAGGGTGCTTCTGAAATTGAGTTGGCAAATGATGGTAAAATTCCTGAATGGGCGCAGATGCTGGAACCTGTCAGAAAGCTACCAACAAATGTGGGAACCCGAATCAGAAAGTGTGTTAATGATGCTCTAGATAAGAATCCGCCAGATTGGGCGAGGAAAATACTGTTGCACTCAATTAGTAAGGAAGTGTACAAGGGCAATGCATCTGGACCAACAAAGAAAGCAGTTATTTCAGTGTTGAAGGAGGTAACTGAAGGAGTGCAGTCAAATCCCGACAAGGGAAGGAAAAAGAAGATTGTTATATCTATTTCTGACATTATTATGAAACAATGCCGCATTGTATTACGTCGTGCAGCTGCTGCAGATGATTCAAAAGTTTTTTGCAATTTGTTAGGAAGAAAATTAATAAATTCTTCTGATAATGATGATGAGGGGCTTCTTGGAACTCCAGCTATGGTGGCCCGCCCTCTTGATTTCCGGACTATTGACCTAAGGTTGGCTTCTGGAGCGTATGGGGGATCTTGTGAAGCTTTTCTCGAGGATGTACGTGAGCTCTGGAGCAATGTTCGTGTTGCTTTTGCGGATCAACCTGATTTAGTTGAACTGTCAGAAAAATTATCCCAGAATTTTGAATTTTTATACAACAAAGAGGTTGTCACTTATGTTGAAAAGTTCACTGATTATGCTAAAGCAGGATGCATCAGTGATCAAATGAAAAAAGATATTGACGATTTCATTGCATCAATAAGTCAGATTCCAAAGGCCCCTTGGGATGAGGGGGTTTGCAAAGTATGCGGAATTGACAGGGATGATGACAGCGTTTTACTTTGTGACAAATGTGATGCTGAGTATCATAAATATTGCTTGATTCCTCCACTTGCAAGGATCCCTGAAGGAAACTGGTACTGTCCATCTTGTATTGGTGGTAAACATTCAACTCAAGATGTCACAGAACGTGCACAGATTCCTGGAAAACGTAGAAGTAAAAAATTCCAGGGAGAAATTAATTGTCTTTACTTGGAAGCACTAACTCATTTATCGGCTGTAATTGAAGAAAAAGAATATTGGGAGTACAGCGCGGGAGAGAGAACGCTTCTTCTCAAGTTTTTGTGTGATGAGTTGCTCAATTCTTCCCTGATACGACAACATCTTGAGCAGTGTGCAGAGTTGTCTGTTGAGTTACATCAGAAATTGCGTGCACTTCACGTAGAGTGGAAAAGCCTGAAAATTAAGGAAGATGTATTATCCACAAAAGCTGCAAAATTTGACACATTGTCTCAAATTACCACCGGGGAATTTGGTCTTAAGGAAGGGTTCACATCTTTGTTCTCAAATACTAGTAAATGTCTGGTTAAGCCACATACTACAACCACCAATCCTAGTGGTCCTGGGGCATTTGTTGATAGTCTACCTTCAGAAGAGATTCCCAAAGTGAAGTGTAGGTTCAACAGTGTTGATAAAAGCATATCTGTGACACATTCAGATTCTGATAACCAACATATGAATTCTATAGAAGGGCAACTTAGGGCTGTTCCTGTGGCTGTGGAGTCTCAATGTACAGATAAATCCCTTAAGTCTTTTCCATCGTCAAATCATATGCCTCAAGAAATAAATGGCTACAGTGGAGCAACTCATATTCAGGGTAACTACCAGAAGTGTGAGGTAAGGGATGTATCTCCTTGTGTGACATTCCAGCAAGTACAATGTGTGCCTGTTGAAGTTTCCCAAAATGCTGTAAATGAGTCGGAAACATACCACCTTGAGCTCAATGCCGTCAAGCGTAATATTTCACTGCTGCAGGACTCTATAAATAGTGTAGGATCACAGCTTCTGAAGCTCTCTGTTCGCCGGGATTTTTTGGGTATTGATTCCATTGGTCGACTGTACTGGGCTTTGGCTACACCCAGAGGACGTTCACGTATAGTTGTTGATGCAAGTGCTGTTCTTCAGCATGGAAGACGATCGTCAGTTAACAAAGATTGTGAAGAGAAGTTTTCTGCTCTGCAGCATTGTGCATTATTTGAGAAGGATAACTATAAGATGTTAGGGCTGGTCAAGGATTCCTCTCCTTTAATGTCCCAACCACTTAATGCTTTAGGCAGTAGTTCACCGTGGATTGTTTATGAAACAGATTCAGAAATTGAAGAGCTATTGGGTTGGTTAAAAGATTGTGACCCTAAAGAAAAAGAGCTGAGAGATTCCATTATGCTGAGGCCAAAATATAGACCTCAAGAGTTTATTAATGCACACACTGAAGATCAGGTTGAGGACCAAGGACCTGTTTATTTGCCAAGAAATACAGGATCTAACTCTCTTGTTACAAAGGCCACTTCTTTGCTGGAAAAGAATTATGGTCCCTTCTTTGAGTTGGATACTGCCGAGGTGTTGAAGAAGCAGAGTAAAAAGACCAGAACAACTAATGATGAAAAGCTGTATAGATGTGAGTGCCTAGAACCCATATGGTCTTCTAGGAAACATTGCTTGTATTGCCACAAAACCTTTTTAAGCGATGTTGAGTTTGAGGGACACAATGATGGAAAATGTAATGCAGGACTTCTGGCCTTGGAGAGGAATAAAGAAAAAAATGGATCTTCTAAAGGCAGAGGGAACTTGAAATGTGATGCCTCACATGAAAAATCCAGAGCTGATGCAGAGACAGCTGGAACCTCAATTAATAAATGTTCCAAGCTAAGTTCGAGATTGATCAAGTTTTCAAATGAAAATTCTTCTTGCCCATTTAAGTTCGAAGATATATGCTCAAAATTTGTGACAAATGATTCCAACAAGGAAGTTGTCAGAGAAATTGGTCTTATTGGTTCAAATGGTGTCCCATCCTTTGTGCCTTCCATATCTCCTTTTGTTAGTGATGATACACCATTCTTAACCCTAAAGGATGGTAGCATTGTTGGTGGTGCTTCTAAAGCTTCAGAAAGCCGGGTTTCTCAGGAAAAAATTGATGGATCTGGCATATGCCATGACCATAACTCAGGCAAATCTGCTGAAAGTTTACCCACAAATGAAAGCAACGAAGCAGGGGAATCTAGCAAATCATCTTTGGGAGAACAGAGAGATGGGAAGTCATCTTCTTGTAGTTCTGCTTCAAATAAGGGAGTTGATGGCTGCTGTGTGGTTCCTTTGTCGTCGTTAAGACCATTAGTTGGAAAAGTTTCTCATATTTTGAAGCAACTAAAGATTAATCTGCTTGATATGGATGCTGCACTTCCGGATGTTGCTTTAAGACCATCAAAGGCACAGTTGGACAGAAGACAGGCCTGGCGTGCATTTGTCAAATCTTCAGCGACTATATTTGAGATGATTCAGGCAATAATTACACTGGAGGATATGATTAAGACGGAGTTCTTAAGGAATGACTGGTGGTACTGGTCATCATTCTCAGCTGCTGCAAAGTCTTCTACTTTGCCTTCTCTTGCTCTTCGCATTTACTCCCTTGATTCAGCCATTCTGTACGAGAAAATGCCCAATTCAAGTTTAACGAACAGCTCTGATCCTCCTGCCGCAGTGGAAATGAAACCAGTGATCACAGTGGATGCAGATAAATCCAAAGCAAGCCGGAAGTCAAACAGGAAAAGGAAGGAACTAGACAGTTAA 6663 0.4217 MELPDSTAGSNNNLNNNIPPPPQQPPPQPPPLNNHQDTRSILCIDLNEIPSPSSSFPETLLDSTIDIVRTYHENPAPPPGGPAALPTGTTACVVCAKSSSSSGGGGNCLVCDGCERSFHLACAGIRGGGGRQGAASIGEWVCGECLAGGVKSKRWPLGVKSKQLLDINASPPSDVDGEELHDARKDTMGDKSLAANQFGAPVTYSTFNNGSVFDFQRASGAVTHAVRVGYEDILNHTQSMARSFAALQSQTQSPNELVLRALRDFISERHGVLEDGWRVELRPSTISSDLYAIYCAPDGKIFDSVYEVANYLGLPSGYNLMESETRNEMSLSIGGPHLSRKRKSSRTLAANGFKDCSYDLSMECDNAQGTVPKATEIGRKENGHSNPHQSADGLPVQFKDFYVLSLGKVDGRPSYYDVNLIFPVGYKSCWHDKITGSLFTCEVLDGGDSGPIFRIKRCSCSEFPIPDGSISLSMQSNCPFVSETNEGQRETHESMDLDGDESIQMLLLEPCAPTENDILSCVASFSNEAYASEGLRPVAGSLQDIAGNSFADNMNFSDEIGEILVEEQSLSSAWRVISQKLINSCKDICKKKGSLKFYCKHVESEMGLWDLRNGKSDTHFPSLDKFCGSPVSVSIPDTIYADKDLNGLYELLEKWLEQDRFGLDAEFVQELLEMNLGVQDSFQYELLSSRNNSSSLPTVDNGFLVVEYKGQSKYQDEEEAIQGLYRRSKKARLTEKYVKEDRCPPPGKPLCSRAPTELISDIFQVWELLERFREILELKEPLLLEELEKELINPWFDELDFPEKSERGMGGSQVLTSQWGDGDCRLICETGPSGSTGSSFIQVETEAMKEEAQVKLASFTYVRCFGVALTKAHNSLLRVLIGELQSKVAALVDPNSEPGETRTRRGRRKDIDSAVPAKRTKVNMLPINELTWPELARRYILAFLSMDGNLESAEITARESGKVFRCLRGDGGLLCGSLTGVAGMEADALLLAEATKKIFGSLSRENDVLIIEEEESDAKGASEIELANDGKIPEWAQMLEPVRKLPTNVGTRIRKCVNDALDKNPPDWARKILLHSISKEVYKGNASGPTKKAVISVLKEVTEGVQSNPDKGRKKKIVISISDIIMKQCRIVLRRAAAADDSKVFCNLLGRKLINSSDNDDEGLLGTPAMVARPLDFRTIDLRLASGAYGGSCEAFLEDVRELWSNVRVAFADQPDLVELSEKLSQNFEFLYNKEVVTYVEKFTDYAKAGCISDQMKKDIDDFIASISQIPKAPWDEGVCKVCGIDRDDDSVLLCDKCDAEYHKYCLIPPLARIPEGNWYCPSCIGGKHSTQDVTERAQIPGKRRSKKFQGEINCLYLEALTHLSAVIEEKEYWEYSAGERTLLLKFLCDELLNSSLIRQHLEQCAELSVELHQKLRALHVEWKSLKIKEDVLSTKAAKFDTLSQITTGEFGLKEGFTSLFSNTSKCLVKPHTTTTNPSGPGAFVDSLPSEEIPKVKCRFNSVDKSISVTHSDSDNQHMNSIEGQLRAVPVAVESQCTDKSLKSFPSSNHMPQEINGYSGATHIQGNYQKCEVRDVSPCVTFQQVQCVPVEVSQNAVNESETYHLELNAVKRNISLLQDSINSVGSQLLKLSVRRDFLGIDSIGRLYWALATPRGRSRIVVDASAVLQHGRRSSVNKDCEEKFSALQHCALFEKDNYKMLGLVKDSSPLMSQPLNALGSSSPWIVYETDSEIEELLGWLKDCDPKEKELRDSIMLRPKYRPQEFINAHTEDQVEDQGPVYLPRNTGSNSLVTKATSLLEKNYGPFFELDTAEVLKKQSKKTRTTNDEKLYRCECLEPIWSSRKHCLYCHKTFLSDVEFEGHNDGKCNAGLLALERNKEKNGSSKGRGNLKCDASHEKSRADAETAGTSINKCSKLSSRLIKFSNENSSCPFKFEDICSKFVTNDSNKEVVREIGLIGSNGVPSFVPSISPFVSDDTPFLTLKDGSIVGGASKASESRVSQEKIDGSGICHDHNSGKSAESLPTNESNEAGESSKSSLGEQRDGKSSSCSSASNKGVDGCCVVPLSSLRPLVGKVSHILKQLKINLLDMDAALPDVALRPSKAQLDRRQAWRAFVKSSATIFEMIQAIITLEDMIKTEFLRNDWWYWSSFSAAAKSSTLPSLALRIYSLDSAILYEKMPNSSLTNSSDPPAAVEMKPVITVDADKSKASRKSNRKRKELDS 2220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00249 2220 Pfam Bromodomain 1168 1221 IPR001487 GO:0005515
Trre11g00249 2220 ProSitePatterns Zinc finger PHD-type signature. 92 145 IPR019786 -
Trre11g00249 2220 Gene3D - 394 503 - -
Trre11g00249 2220 Gene3D - 1121 1242 IPR036427 GO:0005515
Trre11g00249 2220 ProSitePatterns Zinc finger PHD-type signature. 1280 1324 IPR019786 -
Trre11g00249 2220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1266 1348 IPR013083 -
Trre11g00249 2220 ProSiteProfiles Bromodomain profile. 1170 1218 IPR001487 GO:0005515
Trre11g00249 2220 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1359 1403 IPR028942 -
Trre11g00249 2220 ProSiteProfiles FYR domain FYRN motif profile. 393 446 IPR003888 GO:0005634
Trre11g00249 2220 Pfam PHD-finger 1279 1325 IPR019787 -
Trre11g00249 2220 Pfam PHD-finger 92 146 IPR019787 -
Trre11g00249 2220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 149 IPR013083 -
Trre11g00249 2220 SUPERFAMILY Bromodomain 1114 1234 IPR036427 GO:0005515
Trre11g00249 2220 MobiDBLite consensus disorder prediction 18 33 - -
Trre11g00249 2220 PANTHER OS02G0192300 PROTEIN 30 2216 - -
Trre11g00249 2220 MobiDBLite consensus disorder prediction 1 37 - -
Trre11g00249 2220 SUPERFAMILY FYVE/PHD zinc finger 1266 1329 IPR011011 -
Trre11g00249 2220 CDD PHD1_Lid2p_like 1279 1324 - -
Trre11g00249 2220 ProSiteProfiles Zinc finger PHD-type profile. 89 148 IPR019787 -
Trre11g00249 2220 MobiDBLite consensus disorder prediction 2201 2220 - -
Trre11g00249 2220 MobiDBLite consensus disorder prediction 1 17 - -
Trre11g00249 2220 SUPERFAMILY FYVE/PHD zinc finger 90 156 IPR011011 -
Trre11g00249 2220 MobiDBLite consensus disorder prediction 1990 2055 - -
Trre11g00249 2220 SMART PHD_3 1279 1325 IPR001965 -
Trre11g00249 2220 SMART PHD_3 91 146 IPR001965 -
Trre11g00249 2220 ProSiteProfiles Zinc finger PHD-type profile. 1277 1327 IPR019787 -
Trre11g00249 2220 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 263 336 IPR001739 GO:0003677
Trre11g00249 2220 MobiDBLite consensus disorder prediction 2016 2054 - -
Trre11g00249 2220 Pfam Methyl-CpG binding domain 264 315 IPR001739 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00249 Trre-Chr11 1989675 2001567 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00249 36 2217 C2H2 Transcription Factor Family AT3G01460 44.366 0.0 1660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre11g00249 Bromodomain 0.00013 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00249 K22768 - gmx:100820223 3003.77