Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00248 ATGATCATGGAACTCCCCGATTCCACCGCCGGTAGTAACAACAACCTCAACAACAACATACCTCCGCCGCCGCAACAACCACCACCACAACCACCGCCGCTTAACAACCACCAAGACACTCGTTCTATTCTCTGCATCGACCTCAACGAGATCCCTTCACCTTCTTCTTCATTCCCCGAAACCCTACTTGACTCAACAATCGACATCGTTCGTACCTATCACGAGAATCCCGCTCCACCTCCCGGTGGTCCTGCTGCTCTTCCTACTGGTACAACTGCCTGCGTCGTTTGTGCTAAATCCTCATCCTCCTCCGGCGGTGGTGGTAATTGTTTAGTTTGTGACGGCTGCGAGCGGAGTTTTCACTTGGCTTGTGCCGGGATTCGAGGCGGCGGTGGTCGACAGGGTGCTGCGAGTATAGGAGAGTGGGTGTGTGGTGAGTGTTTAGCTGGTGGTGTGAAGAGTAAACGGTGGCCGTTGGGTGTGAAGTCGAAGCAGCTTCTTGATATCAATGCTTCACCGCCTAGTGATGTTGATGGGGAGGAGTTGCATGATGCGAGAAAGGACACCATGGGTGATAAATCTCTTGCTGCCAATCAATTCGGTGCTCCAGTGACATATTCGACATTCAACAATGGGAGTGTCTTTGACTTCCAAAGGGCATCTGGAGCTGTGACACATGCTGTAAGAGTAGGTTATGAGGATATACTGAATCACACCCAATCAATGGCCAGAAGCTTTGCGGCATTACAATCTCAGACTCAGAGTCCAAATGAGTTGGTTTTGCGGGCTCTTAGAGATTTTATTTCTGAACGGCATGGCGTACTGGAGGATGGTTGGCGAGTGGAGCTTAGACCATCAACGATCAGCTCTGACCTGTATGCTATATATTGTGCACCTGATGGAAAAATCTTTGATTCTGTGTATGAAGTAGCTAATTATCTGGGGCTACCGTCTGGCTACAATTTGATGGAATCGGAAACAAGAAATGAAATGTCTCTTTCTATAGGCGGGCCTCACCTATCCAGAAAAAGGAAGTCTTCTAGGACTCTGGCAGCCAATGGTTTTAAGGATTGTTCTTATGATTTAAGTATGGAATGTGACAATGCTCAGGGGACTGTCCCAAAAGCCACTGAGATTGGAAGAAAAGAGAATGGTCACTCCAACCCTCATCAATCCGCTGATGGACTTCCTGTGCAGTTTAAGGACTTCTATGTTCTTTCTTTGGGAAAAGTTGATGGGAGACCTTCATATTATGATGTTAACCTTATCTTTCCTGTGGGCTATAAATCTTGTTGGCATGACAAGATTACCGGCTCTCTTTTTACTTGTGAAGTTTTGGATGGGGGTGATTCTGGACCTATATTTAGGATTAAAAGGTGTTCATGTTCAGAATTTCCTATTCCAGATGGGTCAATCAGCCTTTCAATGCAAAGTAATTGTCCATTTGTGAGTGAAACCAATGAAGGTCAGAGAGAGACTCATGAAAGTATGGATTTAGATGGTGATGAGAGTATCCAGATGCTGCTTTTAGAACCTTGTGCACCAACAGAAAACGACATCTTGAGTTGTGTTGCCAGTTTTTCAAATGAAGCATATGCATCAGAAGGATTAAGGCCAGTTGCTGGTTCACTTCAAGATATTGCTGGAAATTCATTTGCTGATAATATGAATTTTAGTGATGAAATTGGTGAAATTTTGGTGGAAGAGCAGTCCCTATCCTCAGCATGGAGAGTTATTTCTCAAAAGTTAATCAATTCTTGCAAGGATATCTGCAAGAAGAAAGGAAGTCTTAAATTCTATTGTAAACATGTTGAGAGTGAAATGGGCTTATGGGATTTAAGGAATGGAAAAAGTGATACGCACTTCCCTTCATTGGATAAATTTTGTGGTTCACCTGTTTCTGTCAGCATTCCAGATACAATTTATGCAGACAAGGATCTGAATGGCTTGTATGAGCTGTTAGAGAAATGGTTGGAGCAGGATAGATTTGGATTAGATGCTGAATTTGTGCAAGAATTATTGGAAATGAATCTTGGTGTGCAAGACTCTTTTCAATATGAACTTCTGAGTAGTAGAAATAATAGTTCTTCATTGCCAACAGTGGACAATGGTTTCCTAGTGGTCGAATATAAAGGTCAATCAAAATATCAGGATGAAGAAGAAGCAATTCAAGGTTTATATAGAAGGTCTAAGAAGGCAAGATTGACTGAAAAATACGTTAAGGAAGACCGATGTCCACCTCCTGGGAAACCACTGTGCTCTAGGGCTCCTACTGAACTCATCAGTGACATTTTTCAGGTTTGGGAGCTTTTAGAGCGGTTTCGTGAAATTCTAGAACTGAAAGAACCATTGTTATTAGAGGAGCTTGAGAAGGAACTTATCAACCCATGGTTTGATGAATTAGATTTCCCTGAGAAATCTGAGAGGGGAATGGGTGGAAGTCAAGTTTTAACTTCACAATGGGGTGATGGTGATTGCCGACTAATATGTGAAACTGGTCCATCAGGTTCCACAGGAAGTTCTTTTATTCAAGTGGAAACAGAAGCAATGAAAGAGGAAGCCCAAGTTAAGCTCGCATCTTTCACCTATGTCAGATGCTTTGGTGTAGCTTTGACCAAGGCCCATAATTCATTACTAAGAGTGCTAATAGGTGAACTGCAATCAAAGGTGGCCGCTTTGGTGGATCCGAATTCTGAACCCGGAGAGACTCGGACAAGACGTGGGAGAAGGAAAGATATAGATAGTGCAGTTCCTGCCAAACGAACCAAGGTCAATATGCTTCCTATCAATGAATTGACATGGCCAGAACTAGCTCGAAGATATATCTTGGCTTTCTTATCAATGGATGGTAACCTTGAGTCTGCGGAAATTACTGCCCGTGAAAGTGGCAAAGTATTTCGTTGCTTACGAGGCGATGGTGGTTTGCTGTGCGGTTCCCTTACTGGCGTGGCTGGGATGGAAGCTGATGCACTGTTGCTTGCGGAGGCTACGAAGAAGATTTTTGGTTCCTTGAGCAGAGAAAATGATGTACTCATCATAGAAGAAGAGGAGTCTGATGCTAAGGGTGCTTCTGAAATTGAGTTGGCAAATGATGGTAAAATTCCTGAATGGGCGCAGATGCTGGAACCTGTCAGAAAGCTACCAACAAATGTGGGAACCCGAATCAGAAAGTGTGTTAATGATGCTCTAGATAAGAATCCGCCAGATTGGGCGAGGAAAATACTGTTGCACTCAATTAGTAAGGAAGTGTACAAGGGCAATGCATCTGGACCAACAAAGAAAGCAGTTATTTCAGTGTTGAAGGAGGTAACTGAAGGAGTGCAGTCAAATCCCGACAAGGGAAGGAAAAAGAAGATTGTTATATCTATTTCTGACATTATTATGAAACAATGCCGCATTGTATTACGTCGTGCAGCTGCTGCAGATGATTCAAAAGTTTTTTGCAATTTGTTAGGAAGAAAATTAATAAATTCTTCTGATAATGATGATGAGGGGCTTCTTGGAACTCCAGCTATGGTGGCCCGCCCTCTTGATTTCCGGACTATTGACCTAAGGTTGGCTTCTGGAGCGTATGGGGGATCTTGTGAAGCTTTTCTCGAGGATGTACGTGAGCTCTGGAGCAATGTTCGTGTTGCTTTTGCGGATCAACCTGATTTAGTTGAACTGTCAGAAAAATTATCCCAGAATTTTGAATTTTTATACAACAAAGAGGTTGTCACTTATGTTGAAAAGTTCACTGATTATGCTAAAGCAGGATGCATCAGTGATCAAATGAAAAAAGATATTGACGATTTCATTGCATCAATAAGTCAGATTCCAAAGGCCCCTTGGGATGAGGGGGTTTGCAAAGTATGCGGAATTGACAGGGATGATGACAGCGTTTTACTTTGTGACAAATGTGATGCTGAGTATCATAAATATTGCTTGATTCCTCCACTTGCAAGGATCCCTGAAGGAAACTGGTACTGTCCATCTTGTATTGGTGGTAAACATTCAACTCAAGATGTCACAGAACGTGCACAGATTCCTGGAAAACGTAGAAGTAAAAAATTCCAGGGAGAAATTAATTGTCTTTACTTGGAAGCACTAACTCATTTATCGGCTGTAATTGAAGAAAAAGAATATTGGGAGTACAGCGCGGGAGAGAGAACGCTTCTTCTCAAGTTTTTGTGTGATGAGTTGCTCAATTCTTCCCTGATACGACAACATCTTGAGCAGTGTGCAGAGTTGTCTGTTGAGTTACATCAGAAATTGCGTGCACTTCACGTAGAGTGGAAAAGCCTGAAAATTAAGGAAGATGTATTATCCACAAAAGCTGCAAAATTTGACACATTGTCTCAAATTACCACCGGGGAATTTGGTCTTAAGGAAGGGTTCACATCTTTGTTCTCAAATACTAGTAAATGTCTGGTTAAGCCACATACTACAACCACCAATCCTAGTGGTCCTGGGGCATTTGTTGATAGTCTACCTTCAGAAGAGATTCCCAAAGTGAAGTGTAGGTTCAACAGTGTTGATAAAAGCATATCTGTGACACATTCAGATTCTGATAACCAACATATGAATTCTATAGAAGGGCAACTTAGGGCTGTTCCTGTGGCTGTGGAGTCTCAATGTACAGATAAATCCCTTAAGTCTTTTCCATCGTCAAATCATATGCCTCAAGAAATAAATGGCTACAGTGGAGCAACTCATATTCAGGGTAACTACCAGAAGTGTGAGGTAAGGGATGTATCTCCTTGTGTGACATTCCAGCAAGTACAATGTGTGCCTGTTGAAGTTTCCCAAAATGCTGTAAATGAGTCGGAAACATACCACCTTGAGCTCAATGCCGTCAAGCGTAATATTTCACTGCTGCAGGACTCTATAAATAGTGTAGGATCACAGCTTCTGAAGCTCTCTGTTCGCCGGGATTTTTTGGGTATTGATTCCATTGGTCGACTGTACTGGGCTTTGGCTACACCCAGAGGACGTTCACGTATAGTTGTTGATGCAAGTGCTGTTCTTCAGCATGGAAGACGATCGTCAGTTAACAAAGATTGTGAAGAGAAGTTTTCTGCTCTGCAGCATTGTGCATTATTTGAGAAGGATAACTATAAGATGTTAGGGCTGGTCAAGGATTCCTCTCCTTTAATGTCCCAACCACTTAATGCTTTAGGCAGTAGTTCACCGTGGATTGTTTATGAAACAGATTCAGAAATTGAAGAGCTATTGGGTTGGTTAAAAGATTGTGACCCTAAAGAAAAAGAGCTGAGAGATTCCATTATGCTGAGGCCAAAATATAGACCTCAAGAGTTTATTAATGCACACACTGAAGATCAGGTTGAGGACCAAGGACCTGTTTATTTGCCAAGAAATACAGGATCTAACTCTCTTGTTACAAAGGCCACTTCTTTGCTGGAAAAGAATTATGGTCCCTTCTTTGAGTTGGATACTGCCGAGGTGTTGAAGAAGCAGAGTAAAAAGACCAGAACAACTAATGATGAAAAGCTGTATAGATGTGAGTGCCTAGAACCCATATGGTCTTCTAGGAAACATTGCTTGTATTGCCACAAAACCTTTTTAAGCGATGTTGAGTTTGAGGGACACAATGATGGAAAATGTAATGCAGGACTTCTGGCCTTGGAGAGGAATAAAGAAAAAAATGGATCTTCTAAAGGCAGAGGGAACTTGAAATGTGATGCCTCACATGAAAAATCCAGAGCTGATGCAGAGACAGCTGGAACCTCAATTAATAAATGTTCCAAGCTAAGTTCGAGATTGATCAAGTTTTCAAATGAAAATTCTTCTTGCCCATTTAAGTTCGAAGATATATGCTCAAAATTTGTGACAAATGATTCCAACAAGGAAGTTGTCAGAGAAATTGGTCTTATTGGTTCAAATGGTGTCCCATCCTTTGTGCCTTCCATATCTCCTTTTGTTAGTGATGATACACCATTCTTAACCCTAAAGGATGGTAGCATTGTTGGTGGTGCTTCTAAAGCTTCAGAAAGCCGGGTTTCTCAGGAAAAAATTGATGGATCTGGCATATGCCATGACCATAACTCAGGCAAATCTGCTGAAAGTTTACCCACAAATGAAAGCAACGAAGCAGGGGAATCTAGCAAATCATCTTTGGGAGAACAGAGAGATGGGAAGTCATCTTCTTGTAGTTCTGCTTCAAATAAGGGAGTTGATGGCTGCTGTGTGGTTCCTTTGTCGTCGTTAAGACCATTAGTTGGAAAAGTTTCTCATATTTTGAAGCAACTAAAGATTAATCTGCTTGATATGGATGCTGCACTTCCGGATGTTGCTTTAAGACCATCAAAGGCACAGTTGGACAGAAGACAGGCCTGGCGTGCATTTGTCAAATCTTCAGCGACTATATTTGAGATGATTCAGGCAATAATTACACTGGAGGATATGATTAAGACGGAGTTCTTAAGGAATGACTGGTGGTACTGGTCATCATTCTCAGCTGCTGCAAAGTCTTCTACTTTGCCTTCTCTTGCTCTTCGCATTTACTCCCTTGATTCAGCCATTCTGTACGAGAAAATGCCCAATTCAAGTTTAACGAACAGCTCTGATCCTCCTGCCGCAGTGGAAATGAAACCAGTGATCACAGTGGATGCAGATAAATCCAAAGCAAGCCGGAAGTCAAACAGGAAAAGGAAGGAACTAGACAGTTAA 6669 0.4217 MIMELPDSTAGSNNNLNNNIPPPPQQPPPQPPPLNNHQDTRSILCIDLNEIPSPSSSFPETLLDSTIDIVRTYHENPAPPPGGPAALPTGTTACVVCAKSSSSSGGGGNCLVCDGCERSFHLACAGIRGGGGRQGAASIGEWVCGECLAGGVKSKRWPLGVKSKQLLDINASPPSDVDGEELHDARKDTMGDKSLAANQFGAPVTYSTFNNGSVFDFQRASGAVTHAVRVGYEDILNHTQSMARSFAALQSQTQSPNELVLRALRDFISERHGVLEDGWRVELRPSTISSDLYAIYCAPDGKIFDSVYEVANYLGLPSGYNLMESETRNEMSLSIGGPHLSRKRKSSRTLAANGFKDCSYDLSMECDNAQGTVPKATEIGRKENGHSNPHQSADGLPVQFKDFYVLSLGKVDGRPSYYDVNLIFPVGYKSCWHDKITGSLFTCEVLDGGDSGPIFRIKRCSCSEFPIPDGSISLSMQSNCPFVSETNEGQRETHESMDLDGDESIQMLLLEPCAPTENDILSCVASFSNEAYASEGLRPVAGSLQDIAGNSFADNMNFSDEIGEILVEEQSLSSAWRVISQKLINSCKDICKKKGSLKFYCKHVESEMGLWDLRNGKSDTHFPSLDKFCGSPVSVSIPDTIYADKDLNGLYELLEKWLEQDRFGLDAEFVQELLEMNLGVQDSFQYELLSSRNNSSSLPTVDNGFLVVEYKGQSKYQDEEEAIQGLYRRSKKARLTEKYVKEDRCPPPGKPLCSRAPTELISDIFQVWELLERFREILELKEPLLLEELEKELINPWFDELDFPEKSERGMGGSQVLTSQWGDGDCRLICETGPSGSTGSSFIQVETEAMKEEAQVKLASFTYVRCFGVALTKAHNSLLRVLIGELQSKVAALVDPNSEPGETRTRRGRRKDIDSAVPAKRTKVNMLPINELTWPELARRYILAFLSMDGNLESAEITARESGKVFRCLRGDGGLLCGSLTGVAGMEADALLLAEATKKIFGSLSRENDVLIIEEEESDAKGASEIELANDGKIPEWAQMLEPVRKLPTNVGTRIRKCVNDALDKNPPDWARKILLHSISKEVYKGNASGPTKKAVISVLKEVTEGVQSNPDKGRKKKIVISISDIIMKQCRIVLRRAAAADDSKVFCNLLGRKLINSSDNDDEGLLGTPAMVARPLDFRTIDLRLASGAYGGSCEAFLEDVRELWSNVRVAFADQPDLVELSEKLSQNFEFLYNKEVVTYVEKFTDYAKAGCISDQMKKDIDDFIASISQIPKAPWDEGVCKVCGIDRDDDSVLLCDKCDAEYHKYCLIPPLARIPEGNWYCPSCIGGKHSTQDVTERAQIPGKRRSKKFQGEINCLYLEALTHLSAVIEEKEYWEYSAGERTLLLKFLCDELLNSSLIRQHLEQCAELSVELHQKLRALHVEWKSLKIKEDVLSTKAAKFDTLSQITTGEFGLKEGFTSLFSNTSKCLVKPHTTTTNPSGPGAFVDSLPSEEIPKVKCRFNSVDKSISVTHSDSDNQHMNSIEGQLRAVPVAVESQCTDKSLKSFPSSNHMPQEINGYSGATHIQGNYQKCEVRDVSPCVTFQQVQCVPVEVSQNAVNESETYHLELNAVKRNISLLQDSINSVGSQLLKLSVRRDFLGIDSIGRLYWALATPRGRSRIVVDASAVLQHGRRSSVNKDCEEKFSALQHCALFEKDNYKMLGLVKDSSPLMSQPLNALGSSSPWIVYETDSEIEELLGWLKDCDPKEKELRDSIMLRPKYRPQEFINAHTEDQVEDQGPVYLPRNTGSNSLVTKATSLLEKNYGPFFELDTAEVLKKQSKKTRTTNDEKLYRCECLEPIWSSRKHCLYCHKTFLSDVEFEGHNDGKCNAGLLALERNKEKNGSSKGRGNLKCDASHEKSRADAETAGTSINKCSKLSSRLIKFSNENSSCPFKFEDICSKFVTNDSNKEVVREIGLIGSNGVPSFVPSISPFVSDDTPFLTLKDGSIVGGASKASESRVSQEKIDGSGICHDHNSGKSAESLPTNESNEAGESSKSSLGEQRDGKSSSCSSASNKGVDGCCVVPLSSLRPLVGKVSHILKQLKINLLDMDAALPDVALRPSKAQLDRRQAWRAFVKSSATIFEMIQAIITLEDMIKTEFLRNDWWYWSSFSAAAKSSTLPSLALRIYSLDSAILYEKMPNSSLTNSSDPPAAVEMKPVITVDADKSKASRKSNRKRKELDS 2222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00248 2222 Pfam PHD-finger 94 148 IPR019787 -
Trre11g00248 2222 Pfam PHD-finger 1281 1327 IPR019787 -
Trre11g00248 2222 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1361 1405 IPR028942 -
Trre11g00248 2222 SUPERFAMILY FYVE/PHD zinc finger 92 158 IPR011011 -
Trre11g00248 2222 ProSiteProfiles Zinc finger PHD-type profile. 1279 1329 IPR019787 -
Trre11g00248 2222 MobiDBLite consensus disorder prediction 1 39 - -
Trre11g00248 2222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1268 1350 IPR013083 -
Trre11g00248 2222 SUPERFAMILY FYVE/PHD zinc finger 1268 1331 IPR011011 -
Trre11g00248 2222 ProSiteProfiles Zinc finger PHD-type profile. 91 150 IPR019787 -
Trre11g00248 2222 SMART PHD_3 93 148 IPR001965 -
Trre11g00248 2222 SMART PHD_3 1281 1327 IPR001965 -
Trre11g00248 2222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 151 IPR013083 -
Trre11g00248 2222 MobiDBLite consensus disorder prediction 1992 2057 - -
Trre11g00248 2222 SUPERFAMILY Bromodomain 1116 1236 IPR036427 GO:0005515
Trre11g00248 2222 PANTHER OS02G0192300 PROTEIN 31 2218 - -
Trre11g00248 2222 ProSiteProfiles FYR domain FYRN motif profile. 395 448 IPR003888 GO:0005634
Trre11g00248 2222 ProSiteProfiles Bromodomain profile. 1172 1220 IPR001487 GO:0005515
Trre11g00248 2222 ProSitePatterns Zinc finger PHD-type signature. 1282 1326 IPR019786 -
Trre11g00248 2222 ProSitePatterns Zinc finger PHD-type signature. 94 147 IPR019786 -
Trre11g00248 2222 MobiDBLite consensus disorder prediction 2018 2056 - -
Trre11g00248 2222 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 265 338 IPR001739 GO:0003677
Trre11g00248 2222 MobiDBLite consensus disorder prediction 20 35 - -
Trre11g00248 2222 CDD PHD1_Lid2p_like 1281 1326 - -
Trre11g00248 2222 MobiDBLite consensus disorder prediction 2203 2222 - -
Trre11g00248 2222 Pfam Bromodomain 1170 1223 IPR001487 GO:0005515
Trre11g00248 2222 Gene3D - 1123 1244 IPR036427 GO:0005515
Trre11g00248 2222 Pfam Methyl-CpG binding domain 266 317 IPR001739 GO:0003677
Trre11g00248 2222 Gene3D - 396 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00248 Trre-Chr11 1989675 2001573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00248 38 2219 C2H2 Transcription Factor Family AT3G01460 44.366 0.0 1660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre11g00248 Bromodomain 0.00013 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00248 K22768 - gmx:100820223 3007.24