Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00246 ATGGAGTCTGGTCGTCTTTACTTTGATAGTTCTAGTTGTCGTGGTAACAACAACAACATGAATATGCTCTTCCTTGGGAATGCTGATCTTGGTTTTCGAGTAGGAAGGTCAATGATGAGCATGGAGGAAGGCTCTAAAAGGAGACCTTTCTTCAGCTCGCCGGATGAACTGTATGATGAGGAGTATTACGAGGAACAGTCGCCGGAGAAGAAGCGCCGCCTCACTTCCGAGCAGGTCCATCTGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTTGAGCCAGAGAGGAAAACTCAATTGGCCAAGAAGCTAGGGTTGCAGCCTAGACAGGTGGCTGTATGGTTTCAGAACCGTAGGGCTAGATGGAAGACAAAACAACTTGAAAGAGATTATGATGTTCTCAAGTCTTCCTATGATTCCCTACTTTCAACATATGATTCCATTATGAAGGAGAATGAGAAACTCAAATCTGAGGTGGTATCCTTAAATGAGAAGCTTCAAGTTCCAGCTAAAGATATGCCTGAAGAACCTTTATTGTCAGAAAAGAAAGCTGATTCACTTCAAGTGGACATAGCTCAAATTTTCAGCATAAAGGTGGATGACCACATGAGTTCTGGAAGCGTTGGAAGTGCGGTGGTGGACGAGGGTAGTCCTCATGTCGTTGTTGACAGTGTTGATTCATACTTTCCAGCTGACAACTATGGTGTATGTGTGGCTCCTATTGAAAGAGTTCAATCAGAGGAAGATGATGGAAGTGATGATGGGAGGTGTTACTTTGATGTGTTTGTTGCATCTGAAACAACTGAGCAACAAAACCATGATGGGGTAGAAGGATTGAATTGGTGGGGTAATATGTATTATGTTGCATGA 870 0.4333 MESGRLYFDSSSCRGNNNNMNMLFLGNADLGFRVGRSMMSMEEGSKRRPFFSSPDELYDEEYYEEQSPEKKRRLTSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLSTYDSIMKENEKLKSEVVSLNEKLQVPAKDMPEEPLLSEKKADSLQVDIAQIFSIKVDDHMSSGSVGSAVVDEGSPHVVVDSVDSYFPADNYGVCVAPIERVQSEEDDGSDDGRCYFDVFVASETTEQQNHDGVEGLNWWGNMYYVA 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00246 289 PRINTS Lambda-repressor HTH signature 96 105 IPR000047 GO:0003677
Trre11g00246 289 PRINTS Lambda-repressor HTH signature 105 121 IPR000047 GO:0003677
Trre11g00246 289 CDD homeodomain 70 126 IPR001356 GO:0003677
Trre11g00246 289 FunFam Homeobox-leucine zipper protein HAT5 63 127 - -
Trre11g00246 289 Pfam Homeobox associated leucine zipper 125 167 IPR003106 GO:0006355|GO:0043565
Trre11g00246 289 ProSiteProfiles 'Homeobox' domain profile. 65 125 IPR001356 GO:0003677
Trre11g00246 289 Coils Coil 138 165 - -
Trre11g00246 289 SUPERFAMILY Homeodomain-like 59 127 IPR009057 -
Trre11g00246 289 Gene3D - 63 132 - -
Trre11g00246 289 Pfam Homeodomain 70 123 IPR001356 GO:0003677
Trre11g00246 289 ProSitePatterns 'Homeobox' domain signature. 100 123 IPR017970 GO:0000981|GO:0006355
Trre11g00246 289 SMART HOX_1 68 129 IPR001356 GO:0003677
Trre11g00246 289 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 56 204 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00246 Trre-Chr11 1985421 1988050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00246 1 283 Homeobox Transcription Factor Family AT3G01470 57.491 5.75e-97 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre11g00246 Homeodomain 4.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00246 K09338 - gmx:100797836 433.335