LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre11g00234	ATGAGGGCTGGAGGTTATTTCAAGGACATTGACTCTCCTTTGCCAACTGTACCAGGATATGATGTGGTTGGTGTGGTGGTTAGTGTGGGAGACCATGTGAAGAAATTTAAGGTTGGAGATGAAGTTTATGGTGATATCATTGAGATTACTTTAGACCATCCAAAAACTGTTGGTTCTTTGTCAGAGTATACTGTTGCTGAAGAAAAAGTACTTGCTCACAAACCATCTAATTTGAGCTTTGTTGAAGCTGCTAGCCTCCCTTTAGCAATAATAACCGCTTATCAAGCACTTGAAAGAGTTGAATTTTCTTCTGGTCAATCTATACTTGTTCTTGGAGGTGCCGGCGGAGTTGGATCTCTTGTTATTCAGCTAGCCAAGCATGTGTTTGAGGCATCAAGAATTGCAGCTACTGCCGGTACTACAAAACTTGAATTTTTGAAGAAGTTGGGAGCAGATTTGGCAATTGATTATACCAAGGAGAATTATGAAGAACTTACAGAAAAATTCGATGTAGTGTATGATGCAGTAGGTGATAGTGAGAGGGCAGTGAAGGCTATTAAAGAAGGGGGAAAAGTTGTGACCATACTGCCACCCGGAACACCGCCGGCTATCCCTTTCGTAGTGACTTCAGATGGAGCTGTGTTAGAGAAATTACAACCATACTTGGAGAGTGGAAAAGTGAAGCCAATATTGGACCCTAAGAGTCCTTTTCCATTTTCTCAAACTGTGGAAGCATATTCATATCTTAATACTAATAGAGCTGTTGGGAAAATAGTTATACATCCCATTCCATGA	795	0.4075	MRAGGYFKDIDSPLPTVPGYDVVGVVVSVGDHVKKFKVGDEVYGDIIEITLDHPKTVGSLSEYTVAEEKVLAHKPSNLSFVEAASLPLAIITAYQALERVEFSSGQSILVLGGAGGVGSLVIQLAKHVFEASRIAATAGTTKLEFLKKLGADLAIDYTKENYEELTEKFDVVYDAVGDSERAVKAIKEGGKVVTILPPGTPPAIPFVVTSDGAVLEKLQPYLESGKVKPILDPKSPFPFSQTVEAYSYLNTNRAVGKIVIHPIP	264

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre11g00234	264	CDD	MDR_like_2	34	260	-	-
	Trre11g00234	264	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	78	204	IPR036291	-
	Trre11g00234	264	SUPERFAMILY	GroES-like	3	112	IPR011032	-
	Trre11g00234	264	PANTHER	NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC	2	264	IPR044626	GO:0016628
	Trre11g00234	264	Gene3D	-	3	260	-	-
	Trre11g00234	264	Pfam	Zinc-binding dehydrogenase	149	260	-	-
	Trre11g00234	264	Gene3D	-	97	211	-	-
	Trre11g00234	264	Pfam	Alcohol dehydrogenase GroES-like domain	8	45	IPR013154	-
	Trre11g00234	264	SMART	PKS_ER_names_mod	4	260	IPR020843	GO:0016491
	Trre11g00234	264	ProSitePatterns	Quinone oxidoreductase / zeta-crystallin signature.	105	126	IPR002364	GO:0008270\|GO:0016491

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre11g00234	Trre-Chr11	1870990	1873371	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre11g00234	15	205	Monolignol Biosynthesis Gene Families	AT4G37980	25.339	4.27e-07	48.1

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre11g00234	K18980		-	gmx:100791274	398.282

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