Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00231 ATGGTGCTATTTTGTTTGTTTTTATTATTGGGGGCAGTGCATGGCAACCAAGGCAGTGACAATGAAGGCAGTGACGATCAATCTAGCAATGCTCAAGGCAATGACAACGAAGGCAGTGACGACAATGATCAAGGCAACGACAATGATCAAGGCAGTGACAACGAAGGCAGTGACCACGATGAACATAACAATGCTCTAGCTAATCACAATCAACAAAATTCAAGACCTAATGGATTCCATGAAGAGAGAGCAATTCAATCTACTAATAAAGAGATTACAAGATCCGCAATTATAAGATTATTGCCTCCGGTTAAAAGTTTTCTTGATGATGAAAATAATAAAGATTATTGTCCTATTTGCTTGGATGTATTTAAAAAAGGAGCATTGATTCAACCTTTTAGAGTGTGCAACCATGAATTTCATGTCTCGTGTTTATTCTTATGGTTACATGATCAAGGGAAAACTACTTGTCCGGTTTGTCGCCAGGATTTGTAA 495 0.3798 MVLFCLFLLLGAVHGNQGSDNEGSDDQSSNAQGNDNEGSDDNDQGNDNDQGSDNEGSDHDEHNNALANHNQQNSRPNGFHEERAIQSTNKEITRSAIIRLLPPVKSFLDDENNKDYCPICLDVFKKGALIQPFRVCNHEFHVSCLFLWLHDQGKTTCPVCRQDL 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00231 164 MobiDBLite consensus disorder prediction 18 78 - -
Trre11g00231 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 164 IPR013083 -
Trre11g00231 164 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 51 161 - -
Trre11g00231 164 ProSiteProfiles Zinc finger RING-type profile. 117 161 IPR001841 -
Trre11g00231 164 SUPERFAMILY RING/U-box 108 164 - -
Trre11g00231 164 SMART ring_2 117 160 IPR001841 -
Trre11g00231 164 MobiDBLite consensus disorder prediction 18 39 - -
Trre11g00231 164 Pfam Ring finger domain 116 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00231 Trre-Chr11 1838393 1838887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00231 117 164 C3H Transcription Factor Family AT1G72220 39.583 4.88e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00231 - K22378 ahf:112718325 89.7373