Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00223 ATGGCAAACACACCTAGTATTCCATCTCAAACAAAAGCTTGGGTTTATTCTCAATATGGTAACATTGAAGAAATTCTAAAGTTTGATACTAATGTACCTACACCACACCCTAAGGAAGATCAAGTTCTCATCAAGGTTGTGGCTGCTGCACTTAATCCTGTTGATATTAAGAGGGCTCTTGGTCATTTTAAGGACATTGACTCTCCTTTGCCGACTGTGCCAGGATATGATGTAGCTGGTGTGGTGGTTAGTGTTGGAGATCATGTGAAGAAATTTAAGGTTGGAGATGAAGTTTATGGTGACATTAATGAGATCACTTTAGACCATCCAAAAACTGTTGGTTCTGTGGCAGAGTATACTGTTGCTGAAGAAAAAGTACTTGCTCACAAACCATCTAATTTGAGTTTTGTTGAAGCTGCTAGCCTCCCTTTAGCAATAATAACTGCTTATCAAGGACTTGAAAGAGTTGAATTTTCTTCTGGTCAATCTATACTTGTTCTTGGTGGTGCCGGCGGAGTTGGATCTCTTGTTATTCAGCTAGCCAAGCATGTTTTTGAGGCATCAAGAATTGCAGCTACTGCCAGTACTACAAAACTTGAATTTTTGAAGAAGTTGGGAGCAGATTTGGCAATTGATTATACTAAGGAGAATTATGAAGAACTTGCAGAAAAATTTGATGTAGTGTATGATGCAGTAGGTGACAGTGAGAGGGCAGTGAAAGCTGTTAAAGAAGGTGGAAAAGTTGTGACAATACTGCCACCCGGAACACCGCCGGCTATCCCTTTCTTACTGACTTCAGATGGAGCTGTGTTAGAGAAATTGACACCTTACTTGGAGAGTGGAAAAGTGAAGCCAATATTGGACCCTAAGAGTCCCTTTCCATTTTCTGAGACAGTGGAAGCATATTCATATCTTAATACTAATAGAGCTGTTGGGAAAATAGTTATACATCCCATTCCATGA 963 0.3988 MANTPSIPSQTKAWVYSQYGNIEEILKFDTNVPTPHPKEDQVLIKVVAAALNPVDIKRALGHFKDIDSPLPTVPGYDVAGVVVSVGDHVKKFKVGDEVYGDINEITLDHPKTVGSVAEYTVAEEKVLAHKPSNLSFVEAASLPLAIITAYQGLERVEFSSGQSILVLGGAGGVGSLVIQLAKHVFEASRIAATASTTKLEFLKKLGADLAIDYTKENYEELAEKFDVVYDAVGDSERAVKAVKEGGKVVTILPPGTPPAIPFLLTSDGAVLEKLTPYLESGKVKPILDPKSPFPFSETVEAYSYLNTNRAVGKIVIHPIP 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00223 320 Pfam Zinc-binding dehydrogenase 205 316 - -
Trre11g00223 320 CDD MDR_like_2 12 316 - -
Trre11g00223 320 Gene3D - 153 267 - -
Trre11g00223 320 SUPERFAMILY GroES-like 8 168 IPR011032 -
Trre11g00223 320 Gene3D - 18 316 - -
Trre11g00223 320 SMART PKS_ER_names_mod 20 316 IPR020843 GO:0016491
Trre11g00223 320 Pfam Alcohol dehydrogenase GroES-like domain 40 101 IPR013154 -
Trre11g00223 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 134 260 IPR036291 -
Trre11g00223 320 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 161 182 IPR002364 GO:0008270|GO:0016491
Trre11g00223 320 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 3 320 IPR044626 GO:0016628
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00223 Trre-Chr11 1758021 1759769 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00223 39 261 Monolignol Biosynthesis Gene Families AT4G37980 24.506 3.08e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00223 K18980 - gmx:100791274 485.337