Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00206 ATGGAGCGTATTTCGGAAAAACGATTTCCTCTCAGTGCAAAAGATTACAAGTTATATGAAGAGGTTGGGGAAGGTGTTAGTGCCTCGGTATACCGGGCTCTCTGCATTCCACTCAATGAGATTGTTGCCATCAAAGTTCTTGATCTCGAGAAATGCAATAACGATCTGGATGGAATTCGGAGAGAGGTACAGACCATGAGCTTGATTGATCATCCAAATCTTTTACGGGCACATTGCTCTTTTACCGCTGGACACAGTCTTTGGGTTGTGATGCCATACATGTCCGGGGGCTCTTGCCTTCATATAATGAAATCTTCCTTTACTGAGGGTTTTGATGAACCTGTTATTGCAACTGTATTGCGCGAGGTTCTCAAAGCTCTTGTTTATCTCCATGCCCATGGGCACATACATAGAGATGTTAAGGCTGGGAATATTTTGCTTGATTCTAATGGTGACGTCAAAATGGCTGACTTTGGAGTGTCTGCGTGTATGTTTGATACTGGAGACAGGCAACGTTCAAGAAATACTTTTGTTGGAACACCTTGCTGGATGGCTCCTGAAGTTATGCAGCAATTGCATGGATATGATTTTAAAGCAGATATATGGTCATTTGGTATAACAGCACTTGAACTTGCTCATGGTCATGCCCCGTTTTCCAAGTATCCGCCGATGAAAGTTTTGCTTATGACTTTGCAGAATGCTCCTCCAGGTCTTGATTATGAAAGAGACAAGAGATTTTCAAAGTCTTTCAAAGAGTTAGTTGCCACCTGCTTAGTCAAAGACCCAAAGAAGCGTCCAAGTTCAGAAAAGCTTTTAAAGCACCACTTCTTTAAACATGCACGTCCCACCGAATATCTAAGTCGCACCATTCTCGATGGCCTTGCTCCATTAGGAGATCGTTTTAGAACGCTAAAGGCTAAAGAGGCAGATTTATTGATGCAGAACAAGGCTCTTTATGAGGATATGGAGCAATTATCTCAGAAAGAATATATTCGAGGAATTAGTGCCTGGAATTTTAACTTGGAAGATTTAAAAAGTCAAGCCGCTCTTATTCAAGATGCAGACATGTCAAATGCAGAAGAGCCAGATACAGATAAGAAGAAAAAAGACATATCAAATGACTTAAAGGTTCCAGCAGAGGAGCCATCTGCTTCTAATCATTCAGATGGTAGATCCACACAGGACAAGGAGGATGGATTCAATAATCTTCAGGATTTGGAAAGTTCACTTGCTTCATTTCCTATTAAACCTCTTCAAGCACTCAAAGGTTGTTTTGATGTCGGCGATGATGATGTCAATAATACTAGTCCAACAGATTTGGATCATAGTTATGGAAGAATTGATAATGAAAGTTCTGGGCCAAGTAATTTGTCGCCTCAAAATGCTTTAACTCAGCCTAAGAAGTTTTTGAGTGGCTCTATACAGCCTGATAATGCTGCCAAGAAGGCTGCCGATGGGGACAGGGATTATCTACAAACAAAATATCCTTCTGAGCGGAATCACAGTGGTCCATTGCTATATCGGCAAAGGAGAGATGTCAACAACTTTCCATCGGTTGATGACACATCAGAAGGAGCAATTGTCCAGCGTAGGGGGAGGTTTAAGGTCACATCAGCAGATCCCAGTTCAATGGGTCTTTCAAACAACACTTCTGGCCCAGTTGCTGGAAGTCCTCCTCCTAGTAGTCCCCCAATTCAGAACTCAATGGCCACTTCTATTCTACCATCACTGCAGTGTATCTTACAACAGAACGGCTTGCAGAGGGAAGAAATTATTAAATTGATAAAGTATGCAGAGCAATCTTATGGTAAGAGTATAGAATCAATAGAGGCAGGAGCAGCTGATGTTCTGCAGGCACCACCTGCGACACCTAGAGAGAAAGAGCTGCATTTGCAGGTGATTCAACTCCAACAGAGCATTGGAGGCCTTGTTGAGGAACTGCAGAGACAAAAGATGAAAAATCTTCAGTTAGAGAGACAGTTGAGCAGTATGGTCATCAAAACTGAAAAGTGA 2013 0.4213 MERISEKRFPLSAKDYKLYEEVGEGVSASVYRALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMSLIDHPNLLRAHCSFTAGHSLWVVMPYMSGGSCLHIMKSSFTEGFDEPVIATVLREVLKALVYLHAHGHIHRDVKAGNILLDSNGDVKMADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKELVATCLVKDPKKRPSSEKLLKHHFFKHARPTEYLSRTILDGLAPLGDRFRTLKAKEADLLMQNKALYEDMEQLSQKEYIRGISAWNFNLEDLKSQAALIQDADMSNAEEPDTDKKKKDISNDLKVPAEEPSASNHSDGRSTQDKEDGFNNLQDLESSLASFPIKPLQALKGCFDVGDDDVNNTSPTDLDHSYGRIDNESSGPSNLSPQNALTQPKKFLSGSIQPDNAAKKAADGDRDYLQTKYPSERNHSGPLLYRQRRDVNNFPSVDDTSEGAIVQRRGRFKVTSADPSSMGLSNNTSGPVAGSPPPSSPPIQNSMATSILPSLQCILQQNGLQREEIIKLIKYAEQSYGKSIESIEAGAADVLQAPPATPREKELHLQVIQLQQSIGGLVEELQRQKMKNLQLERQLSSMVIKTEK 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00206 670 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00206 670 FunFam Serine/threonine-protein kinase BLUS1 5 93 - -
Trre11g00206 670 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00206 670 MobiDBLite consensus disorder prediction 359 376 - -
Trre11g00206 670 MobiDBLite consensus disorder prediction 516 564 - -
Trre11g00206 670 MobiDBLite consensus disorder prediction 432 463 - -
Trre11g00206 670 SUPERFAMILY Protein kinase-like (PK-like) 14 278 IPR011009 -
Trre11g00206 670 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00206 670 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 6 651 IPR047173 GO:0043539
Trre11g00206 670 Coils Coil 640 660 - -
Trre11g00206 670 MobiDBLite consensus disorder prediction 356 400 - -
Trre11g00206 670 FunFam serine/threonine-protein kinase BLUS1 isoform X1 97 330 - -
Trre11g00206 670 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Trre11g00206 670 MobiDBLite consensus disorder prediction 540 555 - -
Trre11g00206 670 Gene3D Transferase(Phosphotransferase) domain 1 97 329 - -
Trre11g00206 670 CDD STKc_OSR1_SPAK 14 277 - -
Trre11g00206 670 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00206 Trre-Chr11 1612580 1619056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00206 1 665 MAP Kinase Kinase Kinase Kinase AT5G14720 65.693 0.0 904
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Trre11g00206 Pkinase 5.5e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00206 K08835 - gmx:100778837 1073.15