Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00193 ATGGACTTCTCATTCTCAAGTTTGCATTTCGATTCCACCAGAAACACAGCATTTCGTCAAGCCATTGAAAAAACCATCACCAAACCTTGTCACGTTCTCGATATTGGTGCTGGAACTGGTTTGCTTTCGATGATGGCTTCACGAGCTATGGATAGGAAAGGAACGGTGGCGGCGTGTGAGTCTTATCTTCCTATGGTGAAGTTGATGAAGAAGGTTATGCGTCTTAATGGGATGGAGGGAAGAATCAAAGTTATTAATAAGCGTTCTGATGAACTTGAAGTTGGTGTTGATATATCTTCGCGTGCTGATGTTCTTGTGAGTGAGATATTAGATTCAGAGTTATTGGGTGAGGGGCTTATACCAACCCTACAACATGCGCATGACAAGTTGTTGGTTGAGAACCCTCTGACTGTACCATATCGAGCAACTACATATGGACAGCTAGTTGAAAGTACTTTCCTAAGGCGATTGCATGATTTGCATAGCAATGAGGCTGGTGTATCTGATGGCATTCAACTTACCCCTCCTGGACTTGAAAGTGTTTTAGGTGTTAAACGTCAACAATATGCCATGCATTGTGATCCAATAGGAGAAGAACTGAAACCGCTTTCAGAACCCTTCAAAATTTTTGAATTTGATTTTTGGAAACGGCCAGAGAGTTATGGTGAATCTGAGATATGCATAAAGGCAACTGATGATGGCAGAGTTCACGCTGTTGTCTCTTGGTGGGTACTTCAACTTGATCGTGAGGGGACAATTTATTATTCCACTGCTCCTAGGTGGATAAGATCACCAACAACAGTTACAACTGAGGGTCCTGATGATTGGTGTGACCACTGGAAACAGTGTGTTTGGGTTGTTCCAGGAAGCGGTATATCAATATTCAAAGGGGGAGAAATCAATTTGCATGCTACTCATAATGACACTAGTATCTCATATAATTTAGATACCCAAGTGTCAACAACTGAGGTTTTGCATCAGGGGTTAACACCTGGAGATTTTCAGCTTGTACTTCCACCAGAAAGAGCTGCAATATATGGAGACAAAGATTGGAGGCTTTCGATGTTGAAAGCAGTAGAAAGTGCGTTGCAGGGAAGAGGTTGCTCATTATGCTTGGTTGCAGATGATAGTGTGTATTTACCTCTTCTTGTGGCAAAGCTTTCAGAAACACCATATGTGATGCTGTTGAAAAAAAAGGTGAAACAGTTAACCATGCATGATACAAACCAGAAAAAGGTTGACCTGTTAATAGCAGAACCTTTCTATGTTGGACATGATGGCATGCTTCCATGGCAGAACCTGCGGTTTTGGAAGGATCGTACCATACTTGATCATATTCTCTCTAAAGATGCTATAGTAATTCCCAGTAAAGGAATTTTGAGGGCTTGTGCCATCTACCTTCCTGATCTTTGGAAAAGTCGTTGCTGCTTGAGTAAGATAGAAGGTTTTGACCATTATGGGGTAAATGCTACATTGGGAGCTTGCGGTCATCTACCTGAATTGGAAGAGGGTCCTTGTCTGCCTTTTTTTCTTTGGCAGTGTGGAGAATTTGATGTGCTTAGTGAGACATTTGATGTGATGGAGTTTGATTTCACGAAACAAATATGCCAATGTCAAGGAAAATCCCAGCTTCACAACAGAAGGTCTGAAGCTAAAACACTCAGTGAACCAAACTACTCTACAGCACAACGGGATCCCTTGCCGCGTCACAAACGTCTCAAGGCACATGGAGCTATCACTAGCATCTGGCCTGACGAAACCGAACGCGGCCTTGTGAGATACAACCAGCTCTGCAAAACAGAATTGGACACTGCACCCAGAACAGCTGAACATAAACTGATGCGCCCATTTACACGCGACCTGCAGCGGCTAATACAAAACCAAAACCGAAAATACACATCAACATTTCCAATTTTTCAACAAGTATATCAATTATGA 1938 0.4236 MDFSFSSLHFDSTRNTAFRQAIEKTITKPCHVLDIGAGTGLLSMMASRAMDRKGTVAACESYLPMVKLMKKVMRLNGMEGRIKVINKRSDELEVGVDISSRADVLVSEILDSELLGEGLIPTLQHAHDKLLVENPLTVPYRATTYGQLVESTFLRRLHDLHSNEAGVSDGIQLTPPGLESVLGVKRQQYAMHCDPIGEELKPLSEPFKIFEFDFWKRPESYGESEICIKATDDGRVHAVVSWWVLQLDREGTIYYSTAPRWIRSPTTVTTEGPDDWCDHWKQCVWVVPGSGISIFKGGEINLHATHNDTSISYNLDTQVSTTEVLHQGLTPGDFQLVLPPERAAIYGDKDWRLSMLKAVESALQGRGCSLCLVADDSVYLPLLVAKLSETPYVMLLKKKVKQLTMHDTNQKKVDLLIAEPFYVGHDGMLPWQNLRFWKDRTILDHILSKDAIVIPSKGILRACAIYLPDLWKSRCCLSKIEGFDHYGVNATLGACGHLPELEEGPCLPFFLWQCGEFDVLSETFDVMEFDFTKQICQCQGKSQLHNRRSEAKTLSEPNYSTAQRDPLPRHKRLKAHGAITSIWPDETERGLVRYNQLCKTELDTAPRTAEHKLMRPFTRDLQRLIQNQNRKYTSTFPIFQQVYQL 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00193 645 Gene3D Vaccinia Virus protein VP39 4 140 IPR029063 -
Trre11g00193 645 Pfam Ribosomal protein L11 methyltransferase (PrmA) 20 112 - -
Trre11g00193 645 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 1 316 IPR025799 GO:0016274|GO:0018216
Trre11g00193 645 FunFam Protein arginine N-methyltransferase 2 140 - -
Trre11g00193 645 FunFam Protein arginine N-methyltransferase 1.6 141 328 - -
Trre11g00193 645 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 11 313 IPR029063 -
Trre11g00193 645 Gene3D - 459 555 - -
Trre11g00193 645 Gene3D - 141 328 - -
Trre11g00193 645 Gene3D Vaccinia Virus protein VP39 395 455 IPR029063 -
Trre11g00193 645 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 11 315 IPR025799 GO:0016274|GO:0018216
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00193 Trre-Chr11 1562918 1568642 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00193 11 145 C2H2 Transcription Factor Family AT3G12270 30.556 1.30e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00193 K11438 - gmx:100785846 899.812