Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre11g00174 | ATGGACAAAAAACCGTGCAACTCATCTCAAGATCCTGAAGTGAGAAAGGGGCCATGGACCATGGAAGAAGACTTAATTTTAATCAATTATATTGCAAATCATGGTGAAGGTGTTTGGAATTCATTAGCCAAAGCTGCTGGTCTTAAACGTACAGGAAAGAGTTGCAGACTTCGATGGTTAAACTACCTTCGTCCTGATGTTAGAAGAGGGAATATTACACCTGAGGAGCAACTTTTGATCATGGAACTTCATGCAAAGTGGGGAAATAGGTGGTCCAAAATTGCAAAGCATCTTCCAGGAAGAACTGACAATGAGATTAAGAATTTTTGGAGGACAAGGATACAAAAGCACATTAAACAAAATGATAATCCTCATCAACAAAATTATCAACCACAAATGAGTTTAGAGATAAATGATCATCATCATTCAAGTAGTAGCCAAGTTTCCAACATTGTAGAGCCAATGGAAACTTATTCTCCAACTTCATATCACCAAGGAACTTTGGAACCATTTCCAACTCAATTTCCAATAATCAATGATCATCCCTCAAGTTGTTGTACAAATGACAACAATAACAACAATTATTGGAGCATGGAAGACATCTGGTCAATGCAATTACTCAATGGAGATTAA | 633 | 0.3697 | MDKKPCNSSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHIKQNDNPHQQNYQPQMSLEINDHHHSSSSQVSNIVEPMETYSPTSYHQGTLEPFPTQFPIINDHPSSCCTNDNNNNNYWSMEDIWSMQLLNGD | 210 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre11g00174 | 210 | FunFam | Myb-related protein 305 | 73 | 148 | - | - | |
Trre11g00174 | 210 | SUPERFAMILY | Homeodomain-like | 13 | 110 | IPR009057 | - | |
Trre11g00174 | 210 | Gene3D | - | 16 | 68 | - | - | |
Trre11g00174 | 210 | ProSiteProfiles | Myb-like domain profile. | 11 | 63 | IPR001005 | - | |
Trre11g00174 | 210 | PANTHER | MYB TRANSCRIPTION FACTOR-RELATED-RELATED | 11 | 150 | IPR044676 | GO:0003700|GO:0006355|GO:0043565 | |
Trre11g00174 | 210 | SMART | sant | 15 | 65 | IPR001005 | - | |
Trre11g00174 | 210 | SMART | sant | 68 | 116 | IPR001005 | - | |
Trre11g00174 | 210 | Pfam | Myb-like DNA-binding domain | 16 | 63 | IPR001005 | - | |
Trre11g00174 | 210 | Pfam | Myb-like DNA-binding domain | 69 | 112 | IPR001005 | - | |
Trre11g00174 | 210 | FunFam | Myb transcription factor | 16 | 68 | - | - | |
Trre11g00174 | 210 | CDD | SANT | 73 | 112 | IPR001005 | - | |
Trre11g00174 | 210 | Gene3D | - | 73 | 143 | - | - | |
Trre11g00174 | 210 | ProSiteProfiles | Myb-like domain profile. | 64 | 114 | IPR001005 | - | |
Trre11g00174 | 210 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 11 | 63 | IPR017930 | - | |
Trre11g00174 | 210 | CDD | SANT | 18 | 63 | IPR001005 | - | |
Trre11g00174 | 210 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 64 | 118 | IPR017930 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre11g00174 | Trre-Chr11 | 1375966 | 1380689 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre11g00174 | 4 | 210 | MYB Transcription Factor Family | AT3G01530 | 56.667 | 1.40e-77 | 229 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Trre11g00174 | Myb_DNA-binding | 7.1e-15 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre11g00174 | K09422 | - | gmx:778048 | 338.191 |