Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00161 ATGCAAACTTTCTTTGTTTCATCTTCTCCTTCAACACCAAAATTTCACCCTTTTCAAAATTCTCATTATCACTCTTTTTCTTCTTCACCACTGAGACTCACCATTGATGGATTTTCATGCTCATCTTTTTCTTTGTTCCAAACTGTTAGAAAGTCTTCACCTTTTCTCATTTCAAATCCAAAAATTTCATCTTTTAGAGTCTCTGCTGCTTCTGTTCCTGAGGCAAAAAGTGATGAACCAACTCAACCTTCTGAGTTGATTCAGTCTTTGCAACTTGGTTTCATGTTTGCCACTTGGTATCTCTTGAATATTTACTTCAACATTTATAACAAACAGGTTCTAAAAGTCTATCCATTTCCAGCAACTGTTACAGCATTTCAATTTGGATTTGCTTCATTGGTGATTAATTTGATCTGGACTTTGAATCTTCATCCAAGACCAAACATCAGTAAGTCAAAGCTTGTAGCAATACTTCCACTGGCTGTAGCTCATACATTAGGGAACCTGTTGACCAACATTAGTCTCGGGAAAGTTGCTGTTTCTTTCACTCACACCATCAAAGCTATGGAACCTTTCTTCACTGTTGTTCTTTCATCCCTTCTCCTCGGTCAGATGCCAACTTTATGGGTGCTTTCTTCTCTTTTACCTATTGTTGGGGGAGTGGCATTAGCATCAATGACTGAAGTATCTTTCAATTGGATTGGATTCAGCACTGCAATGGCTTCTAACCTTACGAATCAATCACGAAATGTTTTGAGCAAAAAACTAATGGCTAATGAAGAGGACGCGTTGGACAACATCAATCTATATTCAGTTATAACCATCATTTCCTTTTTCCTGTTGTTACCATTTGCTATATTTTTGGAGGGCGTCAAGTTTACTCCTTCATACCTGCAATCTGCTGCAAGCCAAGGATTGAATGTTAGAGAGCTATGCATAAGATCGGTTTTGGCTGCATTCTGCTTCCATGCATATCAGCAGGTTTCATATGGAATATTAGAGAAGGTATCACCTGTGACACACTCGGTAGGAAACTGCGTGAAGCGTGTGGTTGTTATCGTTTCTTCGGTTATCTTCTTCCAAACTCCTGTCTCGCCTATTAATGCACTTGGAACTGCTATTGCACTTGTTGGTGTTTTCTTGTATTCAAGAGCAAAGAGGATTAAGCCAATGCCAAAAACAAATACAGCATAA 1194 0.3861 MQTFFVSSSPSTPKFHPFQNSHYHSFSSSPLRLTIDGFSCSSFSLFQTVRKSSPFLISNPKISSFRVSAASVPEAKSDEPTQPSELIQSLQLGFMFATWYLLNIYFNIYNKQVLKVYPFPATVTAFQFGFASLVINLIWTLNLHPRPNISKSKLVAILPLAVAHTLGNLLTNISLGKVAVSFTHTIKAMEPFFTVVLSSLLLGQMPTLWVLSSLLPIVGGVALASMTEVSFNWIGFSTAMASNLTNQSRNVLSKKLMANEEDALDNINLYSVITIISFFLLLPFAIFLEGVKFTPSYLQSAASQGLNVRELCIRSVLAAFCFHAYQQVSYGILEKVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPINALGTAIALVGVFLYSRAKRIKPMPKTNTA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00161 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 132 227 - -
Trre11g00161 397 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 90 393 IPR004696 GO:0016020|GO:0022857|GO:0055085
Trre11g00161 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 275 387 - -
Trre11g00161 397 PANTHER SOLUTE CARRIER FAMILY 35 91 387 - -
Trre11g00161 397 Pfam Triose-phosphate Transporter family 90 383 IPR004853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00161 Trre-Chr11 1279450 1283163 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00161 65 394 Antiporters AT5G33320 66.667 1.06e-151 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00161 K15283 - gmx:100819280 578.941