Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00147 ATGAGGCCTATTCTGATGAAAGGCCATGAAAGGCCATTAACATTCCTTAAGTACAACAAGGATGGCGATCTTCTATTTTCTTGTGCCAAAGACCACAACCCCACCGTGTGGTTTGCTGACAATGGCGAACGCTTAGGAACTTATCGAGGCCATAATGGTGCTGTTTGGTGCTGCGATGTCACAAGAGATTCGGGCCTACTCATTACCGGCAGTGCTGACACGACGGCGAAGCTGTGGAATGTGCAAACTGGTCAACAGTTGTTCACCTTCAATTTTGGTGCCCCCACAAAGTCTGTTGACTTTTCTGTCGGTGATAAGCTTGCAGTCATTACCACGGACCCCTTTATGGAACTTTCTTCAGCAATCCATGTCAAACGCATTGCTAAAGATCCTGCAGACCAAACTGAGGAATCTTTGCTTGTCATTAAGGGCCCACAGGGTAGAATCAATAGAGCCGTTTGGGGACCCCTCAATGAAACTATTATCAGTGGTGGAGAAGACACTGTCATTCGAATTTGGGATACCGAGACTGGAAAACTACTTAAGGAATCAGACAAGGAATCTGGCCACAAAAAGACAATACAATCACTTGTTAAATCTGCTGATGGATCACATTTCCTAACCGGCTCCCTTGATAAGTCTGCTAAGCTTTGGGATAGCAGAACATTGACTCTTATCAAGACATACGTGGCCGAGACTCCTATCAATGCAGTTGCAATGTCCCCTCTTCTTGATCATGTGGTTGTTGGAGGTGGTCAGGACGCAGCACATGTGACAACTACTGATCATCGTGCTGGAAAATTTGAAGCCAAGTTCTATGATAAGATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGACATTTTGGACCGATTAACGCACTGACCTTTAACCCTGATGGAAGAAGTTTTGCAAGTGGAGGTGAAGATGGTTACGTACGTTTGCATCACTTTGACCCTGAATATTTCAATATCAAAATTTAG 981 0.4455 MRPILMKGHERPLTFLKYNKDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVTRDSGLLITGSADTTAKLWNVQTGQQLFTFNFGAPTKSVDFSVGDKLAVITTDPFMELSSAIHVKRIAKDPADQTEESLLVIKGPQGRINRAVWGPLNETIISGGEDTVIRIWDTETGKLLKESDKESGHKKTIQSLVKSADGSHFLTGSLDKSAKLWDSRTLTLIKTYVAETPINAVAMSPLLDHVVVGGGQDAAHVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALTFNPDGRSFASGGEDGYVRLHHFDPEYFNIKI 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00147 326 SUPERFAMILY WD40 repeat-like 4 314 IPR036322 GO:0005515
Trre11g00147 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Trre11g00147 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 48 85 - -
Trre11g00147 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 314 IPR001680 GO:0005515
Trre11g00147 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 6 47 IPR001680 GO:0005515
Trre11g00147 326 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 325 - -
Trre11g00147 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 222 - -
Trre11g00147 326 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 1 326 IPR027525 GO:0003743|GO:0005737|GO:0005852
Trre11g00147 326 ProSitePatterns Trp-Asp (WD) repeats signature. 161 175 IPR019775 -
Trre11g00147 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 284 314 - -
Trre11g00147 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Trre11g00147 326 Gene3D - 1 326 IPR015943 GO:0005515
Trre11g00147 326 PRINTS G protein beta WD-40 repeat signature 67 81 IPR020472 -
Trre11g00147 326 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Trre11g00147 326 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Trre11g00147 326 ProSitePatterns Trp-Asp (WD) repeats signature. 67 81 IPR019775 -
Trre11g00147 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 48 89 IPR001680 GO:0005515
Trre11g00147 326 CDD WD40 7 314 - -
Trre11g00147 326 Pfam WD domain, G-beta repeat 43 80 IPR001680 GO:0005515
Trre11g00147 326 Pfam WD domain, G-beta repeat 141 174 IPR001680 GO:0005515
Trre11g00147 326 Pfam WD domain, G-beta repeat 283 314 IPR001680 GO:0005515
Trre11g00147 326 Pfam WD domain, G-beta repeat 188 219 IPR001680 GO:0005515
Trre11g00147 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Trre11g00147 326 SMART WD40_4 177 219 IPR001680 GO:0005515
Trre11g00147 326 SMART WD40_4 41 80 IPR001680 GO:0005515
Trre11g00147 326 SMART WD40_4 135 174 IPR001680 GO:0005515
Trre11g00147 326 SMART WD40_4 222 260 IPR001680 GO:0005515
Trre11g00147 326 SMART WD40_4 1 38 IPR001680 GO:0005515
Trre11g00147 326 SMART WD40_4 277 316 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00147 Trre-Chr11 1156608 1159155 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00147 1 326 Eukaryotic Initiation Factors Gene Family AT2G46290 78.963 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00147 K03246 - gmx:100793485 613.994