Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00144 ATGGCCACTCCAAATTCCAAATCGATCTTCAACATCGTAACTTCACGAGAGCTTAATTCCTTTCAAGTTCGAAAAAGACCTCGCATGGATGGTTGGGTTCATGGCGTTTTCGAGATGGGAGCTTTAGCCACACAGCACAATGGTGAAAATATTGTTCCTCTTGCTCTCTCTTTTGCTAAGACTTCGAAATTTTCGCACATTCTTGCTTTATCTAATGAGGAAGGATATATTAGCTTGTTTGATACTCGCCGTAAATTCTTACAGCCCTCGTGCTTTGAAGAAAACGCAGATAATGCAAGGATTTGTGAATGGAGTGCACATAATAATGCTGTTTTTGATGTCAATTGGATTAAGGATGATACACAGATCCTTACTGCTTCTGGTGATCAAACGGTGAAGATATGGGATGTTCAAGAAAAGAAGTGTCTTGGAGTGTTAACAGGGCACACGGGGAGTGTGAAATCTTTTTGTTCTCATCCAACTAATTCCAATATTATCGTCTCTTGTTCAAGAGATGGATCCTTCCGGCTTTGGGACTTAAGATGTAACTCCAATACTAAGAATAGGCACGGAGAAGTTAGCATATGTTCAATGGCTGTTGTAAAAGGAGCACATCTCTCATATCAAATATACCGAGTAAGGGGGCGCAAGGGCAGGGGTGCTTCCATGAGTATTACTTCTGCTCTTTGGCTCAAGGATGAAGTTTCCATAGCCACTGCTGGGGCAGCAGATAGTGTGCTGAAGTTTTGGGATACCAGAAATTTAAAAAGTATTGTCATGCAAACATGTCCTCAACCTGAGTCAACAGGAAAGCAAATATTACATGGTATATCTAGCCTGTCCCAAGATGACAGTGGACTTTTGCTCTCAGCTTCCTGCATGGATAGCCGAGTTTATCTATATAATACACTTCAACTTGAAAAGGGTCCTTTAAGACATTTTGAAGGAGGTCGTATAGATTCATTTTTTGTGAAGGCTGCAATTAGCCCCGATGCGTATAGCATAGTGTCTGGTTCTAGTACCGGAAAAGCATATGTTTGGCAGGTTGACAAGCCTCAAGTGCCACCTACTATTTTGAAGAGCCATGAAGATGATGAGGAAGTTACCGCAGTTGACTGGTGTCGTTCTGATATTGGAAAACTAGCTACTGCATCTGATGATTTCACAATCCGGATATGGAATCAACGCAGTTATGTTAGCACAACAAAGTATCCATTTTCCATTCGAAGAAGAGTTAGGGCCATGCCTAGAACAGAGTGCAAAATGCTATTAAACAATGAAGAAATTTGCCCCAAGTCAGGTCTCGAAACACCGCACCATCCAATGAAGTCAGCCACTCCAATCACACCACCTAAAACGACTACATCAGAAGGCCATAAGAACCATCTTTCATCAGAATTTGATCTAACCATATCTCCTAAAAACACTCCAGAGTCCGCTTTGAAAAGTCCTTCATCTGTATTGAACCCACCACCCTCCCTAAAAAGAACTATCCGGGACTACTTTGTAGCATCTTCATGA 1521 0.4168 MATPNSKSIFNIVTSRELNSFQVRKRPRMDGWVHGVFEMGALATQHNGENIVPLALSFAKTSKFSHILALSNEEGYISLFDTRRKFLQPSCFEENADNARICEWSAHNNAVFDVNWIKDDTQILTASGDQTVKIWDVQEKKCLGVLTGHTGSVKSFCSHPTNSNIIVSCSRDGSFRLWDLRCNSNTKNRHGEVSICSMAVVKGAHLSYQIYRVRGRKGRGASMSITSALWLKDEVSIATAGAADSVLKFWDTRNLKSIVMQTCPQPESTGKQILHGISSLSQDDSGLLLSASCMDSRVYLYNTLQLEKGPLRHFEGGRIDSFFVKAAISPDAYSIVSGSSTGKAYVWQVDKPQVPPTILKSHEDDEEVTAVDWCRSDIGKLATASDDFTIRIWNQRSYVSTTKYPFSIRRRVRAMPRTECKMLLNNEEICPKSGLETPHHPMKSATPITPPKTTTSEGHKNHLSSEFDLTISPKNTPESALKSPSSVLNPPPSLKRTIRDYFVASS 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00144 506 MobiDBLite consensus disorder prediction 434 494 - -
Trre11g00144 506 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 5 504 - -
Trre11g00144 506 SMART WD40_4 97 136 IPR001680 GO:0005515
Trre11g00144 506 SMART WD40_4 139 179 IPR001680 GO:0005515
Trre11g00144 506 SMART WD40_4 352 394 IPR001680 GO:0005515
Trre11g00144 506 SMART WD40_4 267 302 IPR001680 GO:0005515
Trre11g00144 506 SMART WD40_4 206 251 IPR001680 GO:0005515
Trre11g00144 506 SMART WD40_4 307 348 IPR001680 GO:0005515
Trre11g00144 506 Pfam WD domain, G-beta repeat 357 394 IPR001680 GO:0005515
Trre11g00144 506 Pfam WD domain, G-beta repeat 103 136 IPR001680 GO:0005515
Trre11g00144 506 Pfam WD domain, G-beta repeat 141 179 IPR001680 GO:0005515
Trre11g00144 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 188 IPR001680 GO:0005515
Trre11g00144 506 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 138 - -
Trre11g00144 506 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 181 - -
Trre11g00144 506 MobiDBLite consensus disorder prediction 465 492 - -
Trre11g00144 506 PRINTS G protein beta WD-40 repeat signature 381 395 IPR020472 -
Trre11g00144 506 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Trre11g00144 506 PRINTS G protein beta WD-40 repeat signature 123 137 IPR020472 -
Trre11g00144 506 Gene3D - 39 190 IPR015943 GO:0005515
Trre11g00144 506 SUPERFAMILY WD40 repeat-like 62 405 IPR036322 GO:0005515
Trre11g00144 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 145 IPR001680 GO:0005515
Trre11g00144 506 Gene3D - 206 411 IPR015943 GO:0005515
Trre11g00144 506 ProSitePatterns Trp-Asp (WD) repeats signature. 123 137 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00144 Trre-Chr11 1090588 1094171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00144 105 307 U-box Gene Family AT2G33340 24.775 5.67e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00144 K11790 - gmx:100775857 672.159