Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00141 ATGGAGAAAGAGATTGTGGAAAACCTTTGGAATGGTGATAGTGAAGCTCAAATTCAAGCAGCAATGGAACTTAGTAGATTGTGCAATAAGCAAAAGCTCAAATTGGCAGAAAATGGTGTTATGGTTCCTCTTGTTTCCATGCTTCATTCTGAAAACTATGAAGTTATAGAAGCTTCTCTTTGTGCTTTTCTCAGCCTATCCTTTGGCAGTGATAGAAACAAGATTCGTATCGTTAGGTACGGAGTTTTGCCAATTTTGTTGAACCTCCTCCATTGTGAAAGCCAGACAGTGATAAAATTGTCATTAGCAGCCATGTTAACACTTTCTTCTTGCAAGGCAAATAAGATAGCAATAGCTTCATCTGGTGCAGTTCAAATTTTGGTTACATATATCAATAGTAGCAACAACATTCACACTCAGTCTCAGCTAGATGCTATAGCTACTCTCCATAACCTTACAACCTGTCAAGAGATTATTCCATTGATTGTATCTTCTGGTGTTATATTCTCCTTGCTTGAACTTATCCACGGCTCGGTAAAATCATCTTTGTTGGCTGAGAAAGCAATAGGGTTGCTAGAAAATATTGTTTCTTCATCAGACAGTGCACTTTGTGAGGCTGCTAGTACCGGAGGAGCGATTAGGATATTGGTTGAGACTATTGAAGATGGATCTTCACTAGGAAAAGAGCATGCAGTTGGTATACTTTTACTTATATGTCAAAGCTGTAGAGAAAAATATAGGGTATTGATTTTGACAGACGGAGTGATGCCAGGATTGCTTCAGTTAAGCGTTGATGGAACATGGAGAGCTAAATCCGTGGCTGGAGAATTGTTGTTGCTTCTAAGAGACTGCTCTAGTTATAGCTCGAGGCGAAAACAAATTAATCATAAGCTTATAGAACAGTTGATGGAAGAAATTGATGCAGAAGGTGATAAATTGGCAGATACTACTTTGAGATTGGTAGAGGAGATGATTGCAAAGCTCAATACATGA 993 0.3857 MEKEIVENLWNGDSEAQIQAAMELSRLCNKQKLKLAENGVMVPLVSMLHSENYEVIEASLCAFLSLSFGSDRNKIRIVRYGVLPILLNLLHCESQTVIKLSLAAMLTLSSCKANKIAIASSGAVQILVTYINSSNNIHTQSQLDAIATLHNLTTCQEIIPLIVSSGVIFSLLELIHGSVKSSLLAEKAIGLLENIVSSSDSALCEAASTGGAIRILVETIEDGSSLGKEHAVGILLLICQSCREKYRVLILTDGVMPGLLQLSVDGTWRAKSVAGELLLLLRDCSSYSSRRKQINHKLIEQLMEEIDAEGDKLADTTLRLVEEMIAKLNT 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00141 330 FunFam U-box domain-containing protein 4 3 199 - -
Trre11g00141 330 SUPERFAMILY ARM repeat 4 312 IPR016024 -
Trre11g00141 330 Gene3D - 206 314 IPR011989 -
Trre11g00141 330 SMART arm_5 70 110 IPR000225 GO:0005515
Trre11g00141 330 SMART arm_5 28 68 IPR000225 GO:0005515
Trre11g00141 330 SMART arm_5 111 154 IPR000225 GO:0005515
Trre11g00141 330 SMART arm_5 155 197 IPR000225 GO:0005515
Trre11g00141 330 Coils Coil 299 319 - -
Trre11g00141 330 FunFam U-box domain-containing protein 4 203 319 - -
Trre11g00141 330 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 81 123 IPR000225 GO:0005515
Trre11g00141 330 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 122 167 IPR000225 GO:0005515
Trre11g00141 330 Gene3D - 140 205 IPR011989 -
Trre11g00141 330 PANTHER U BOX DOMAIN-CONTAINING 4 286 - -
Trre11g00141 330 Pfam Armadillo/beta-catenin-like repeat 70 105 IPR000225 GO:0005515
Trre11g00141 330 Gene3D - 3 139 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00141 Trre-Chr11 1078906 1080441 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00141 4 283 U-box Gene Family AT3G54790 30.634 7.97e-26 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00141 - - gmx:100778534 500.36