Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00140 ATGCTACAATTACTACTATTCCCTAACAAAGAAAAGAACATTGAAAGAGCTTCAATGGAGAAAGAGATTGTGGAAAACCTTTGGAATGGTGATAGTGAAGCTCAAATTCAAGCAGCAATGGAACTTAGTAGATTGTGCAATAAGCAAAAGCTCAAATTGGCAGAAAATGGTGTTATGGTTCCTCTTGTTTCCATGCTTCATTCTGAAAACTATGAAGTTATAGAAGCTTCTCTTTGTGCTTTTCTCAGCCTATCCTTTGGCAGTGATAGAAACAAGATTCGTATCGTTAGGTACGGAGTTTTGCCAATTTTGTTGAACCTCCTCCATTGTGAAAGCCAGACAGTGATAAAATTGTCATTAGCAGCCATGTTAACACTTTCTTCTTGCAAGGCAAATAAGATAGCAATAGCTTCATCTGGTGCAGTTCAAATTTTGGTTACATATATCAATAGTAGCAACAACATTCACACTCAGTCTCAGCTAGATGCTATAGCTACTCTCCATAACCTTACAACCTGTCAAGAGATTATTCCATTGATTGTATCTTCTGGTGTTATATTCTCCTTGCTTGAACTTATCCACGGCTCGGTAAAATCATCTTTGTTGGCTGAGAAAGCAATAGGGTTGCTAGAAAATATTGTTTCTTCATCAGACAGTGCACTTTGTGAGGCTGCTAGTACCGGAGGAGCGATTAGGATATTGGTTGAGACTATTGAAGATGGATCTTCACTAGGAAAAGAGCATGCAGTTGGTATACTTTTACTTATATGTCAAAGCTGTAGAGAAAAATATAGGGTATTGATTTTGACAGACGGAGTGATGCCAGGATTGCTTCAGTTAAGCGTTGATGGAACATGGAGAGCTAAATCCGTGGCTGGAGAATTGTTGTTGCTTCTAAGAGACTGCTCTAGTTATAGCTCGAGGCGAAAACAAATTAATCATAAGCTTATAGAACAGTTGATGGAAGAAATTGATGCAGAAGGTGATAAATTGGCAGATACTACTTTGAGATTGGTAGAGGAGATGATTGCAAAGCTCAATACATGA 1047 0.382 MLQLLLFPNKEKNIERASMEKEIVENLWNGDSEAQIQAAMELSRLCNKQKLKLAENGVMVPLVSMLHSENYEVIEASLCAFLSLSFGSDRNKIRIVRYGVLPILLNLLHCESQTVIKLSLAAMLTLSSCKANKIAIASSGAVQILVTYINSSNNIHTQSQLDAIATLHNLTTCQEIIPLIVSSGVIFSLLELIHGSVKSSLLAEKAIGLLENIVSSSDSALCEAASTGGAIRILVETIEDGSSLGKEHAVGILLLICQSCREKYRVLILTDGVMPGLLQLSVDGTWRAKSVAGELLLLLRDCSSYSSRRKQINHKLIEQLMEEIDAEGDKLADTTLRLVEEMIAKLNT 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00140 348 Coils Coil 348 348 - -
Trre11g00140 348 Gene3D - 158 344 IPR011989 -
Trre11g00140 348 FunFam U-box domain-containing protein 4 221 337 - -
Trre11g00140 348 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 99 141 IPR000225 GO:0005515
Trre11g00140 348 Gene3D - 21 157 IPR011989 -
Trre11g00140 348 SMART arm_5 173 215 IPR000225 GO:0005515
Trre11g00140 348 SMART arm_5 88 128 IPR000225 GO:0005515
Trre11g00140 348 SMART arm_5 46 86 IPR000225 GO:0005515
Trre11g00140 348 SMART arm_5 129 172 IPR000225 GO:0005515
Trre11g00140 348 PANTHER U BOX DOMAIN-CONTAINING 14 304 - -
Trre11g00140 348 Pfam Armadillo/beta-catenin-like repeat 88 123 IPR000225 GO:0005515
Trre11g00140 348 Coils Coil 317 337 - -
Trre11g00140 348 FunFam U-box domain-containing protein 4 21 217 - -
Trre11g00140 348 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 140 185 IPR000225 GO:0005515
Trre11g00140 348 SUPERFAMILY ARM repeat 22 330 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00140 Trre-Chr11 1078852 1080441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00140 22 301 U-box Gene Family AT3G54790 30.634 1.18e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00140 - - gmx:100778534 500.36