Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00102 ATGGAGCAGTCATGGGAGGAGGATATATGGCCTCTTCGTAAGTTGGAGATGTGCCAAGAAGAAGACTACCTTGGTGACTACATATCTTTAGAAGCCCCAGCTGTGGCCGCGACCGAGAACACACTACAAAAAATTTGCCATATACCAAAGGTTGTTTCCAGTGAGATGATTGTATGCTCTAATAAGTCGCCGGAGCTGCTTCCTCCGTCCACATCCTCTAGAAATTGCATTATCTCTTTTGATAACTCCGCGGTAACACCATTAAAACCATCTGTGATATCGTCCAAACCACCACGTCCGCCATGTTCAGCAAAAAAGAGGACTTCTGAGAAACTAAAGAGCTTGGAAGCAAAAGCAATTAACAAAGAAGGAGAAAAGAAGATTATAAGAAGCGGATCTAAGACTATACACACATTGGTAGAGAGGAAAAGGAGACTTGAACTCGCAAATAAGTTCATAGAGCTTTCAACTACAATTCCTAGCTTGAAGAAGAAAGACAAAGCTTCTATAGTTATGGGCGCTATCAATCACGTGGAACAACTCCAAAAAAGAGTGAAGGAGTTAGAAAAGCAAAACAAGAGAGGCAAAGAACGTACGAGTGAAAGGCTCCCTTATGTCAAAGCAAAGGTGTTGGAGAAAAATATACTCATTTACATCAATTGTGAGAAACAAAATGGCATTGAACTCAAAATATTAGAAATGCTTGAAAATCTTCATTTGTTTGTCACCAGCACCAGCGTATTGCCGTTTGGTAGTTCAACTCTTGGCATTACTATCATTGCCAAGATGGACGATGCATACAAAACGAGAATGGTAGATCTAATGGATAACGTAAGGCAATTGCGGCTGAATGGTTCTGCAAAACATCCAACATGA 876 0.4075 MEQSWEEDIWPLRKLEMCQEEDYLGDYISLEAPAVAATENTLQKICHIPKVVSSEMIVCSNKSPELLPPSTSSRNCIISFDNSAVTPLKPSVISSKPPRPPCSAKKRTSEKLKSLEAKAINKEGEKKIIRSGSKTIHTLVERKRRLELANKFIELSTTIPSLKKKDKASIVMGAINHVEQLQKRVKELEKQNKRGKERTSERLPYVKAKVLEKNILIYINCEKQNGIELKILEMLENLHLFVTSTSVLPFGSSTLGITIIAKMDDAYKTRMVDLMDNVRQLRLNGSAKHPT 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00102 291 Coils Coil 105 125 - -
Trre11g00102 291 Coils Coil 171 198 - -
Trre11g00102 291 Gene3D - 129 203 IPR036638 GO:0046983
Trre11g00102 291 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 199 IPR036638 GO:0046983
Trre11g00102 291 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 181 IPR011598 GO:0046983
Trre11g00102 291 SMART finulus 138 187 IPR011598 GO:0046983
Trre11g00102 291 PANTHER BHLH TRANSCRIPTION FACTOR 56 280 - -
Trre11g00102 291 Pfam Helix-loop-helix DNA-binding domain 134 182 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00102 Trre-Chr11 823581 827087 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00102 49 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 31.022 1.18e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre11g00102 HLH 1.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00102 - - tpra:123896700 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g00159 7 1109939 1116799 Trre11g00102 11 823581 827087 PCT