LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre11g00097	ATGTTAGAGAGTGGTAGTAGTGGACGTGATTCTGGAATGAGTTTAGAAACAGTTAATTCCAATACACAGCGAACTTCATTGAGAAGCGGAACTGAAAGCATCTGCAGCACAAGTTTCAGCCGTCTCTTCTTTGAACTTCTTCCATCATCATCTTCACCGGAGTCTTTCTCCATCAAACCTCACCGTTCCTCTGATTTCGCCTACTCCGCCATCCGTAAATCCGGTCTTACTTTCCGTGATTTTCATCTTCTCCATCGCATAGGCTCCGGTGACATAGGTACAGTTTACCTCTGTCGTCTCCGTGACTCCTCTGTAAACTACCTCGACGATGACGATCCTTCGTTTTACTACGCTATGAAAGTTGTTGATAAAGATGCTGTTGCTCTTAAGAAAAAATCACACAGAGCTGAAATGGAGAGAAAGATTATCAAGATGCTTGATCATCCTTTTCTTCCTATTTTATATGCTGAGTTTGAAGCTTCTCGTTATTCATGCATTGTTATGGAGTATTGCTCCGGTGGAGATTTACACTCTCTCCGTCATCGTCACCACCGTAACTGTTTTTCTCTCTCCTCAGCAAGATTTTACGCGGCGGAGGTACTGGTGGCATTGGAATACTTGCACATGTTAGGAATAATCTACAGAGATCTAAAGCCGGAAAATGTGTTAGTAAGATCCGACGGTCACATCATGTTATCTGATTTTGATCTATCTCTAATCTCTCACGCAATCCCAGCCGTTGAATCATCATCACCAGAATGTTCTTCTATTTATGATCCACCTGAAGAAGTTTCCTGCACTCGTCCTAATTCCATTCCAACTCCTTTCAAATGTCTCTCACAAGGACTTTTCCGGTCTAAAAAGGTTCAAACATTTCAATCAAACCGGAATCGGCTATTTGTAGCTGAACCGGTTGGAGCAAGATCTTGTTCATTCGTTGGAACACACGAATACGTTTCACCGGAAGTAGCTTCTGGAAACTCTCACGGTAACGCCGTTGATTGGTGGTCATTTGGAATATTCATCTACGAGATGGTGTACGGTAGAACACCGTTTGCGGGACCATCAAACGAAGCAACGTTGAGGAACATTATTAGAAAGCCACTTAGTTTTCCTACTGCTACGCCTTCTAGTTCGCTTGAAATGCACGCGCGGGATCTTGTTTCAGGTTTGCTTAACAAAGATCCGAACCGGAGACTCGGGTCGAAGCGAGGTGCGGCGGATGTTAAGATGCATCCGTTTTTTTTGGGGCTTAATTTGGCTTTGATACGGATGGTGACACCGCCGGAGGTTCCTGGTTTAAGAAGGCAGAAAACGACGCCGTTGAAGAATGGGAATAAAAGTTCAAGTAAACAATACCCTGCTTCGTCGTTTGATTACTTTTGA	1386	0.4372	MLESGSSGRDSGMSLETVNSNTQRTSLRSGTESICSTSFSRLFFELLPSSSSPESFSIKPHRSSDFAYSAIRKSGLTFRDFHLLHRIGSGDIGTVYLCRLRDSSVNYLDDDDPSFYYAMKVVDKDAVALKKKSHRAEMERKIIKMLDHPFLPILYAEFEASRYSCIVMEYCSGGDLHSLRHRHHRNCFSLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLISHAIPAVESSSPECSSIYDPPEEVSCTRPNSIPTPFKCLSQGLFRSKKVQTFQSNRNRLFVAEPVGARSCSFVGTHEYVSPEVASGNSHGNAVDWWSFGIFIYEMVYGRTPFAGPSNEATLRNIIRKPLSFPTATPSSSLEMHARDLVSGLLNKDPNRRLGSKRGAADVKMHPFFLGLNLALIRMVTPPEVPGLRRQKTTPLKNGNKSSSKQYPASSFDYF	461

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre11g00097	461	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	212	224	IPR008271	GO:0004672\|GO:0006468
	Trre11g00097	461	SUPERFAMILY	Protein kinase-like (PK-like)	52	437	IPR011009	-
	Trre11g00097	461	Gene3D	Phosphorylase Kinase; domain 1	79	170	-	-
	Trre11g00097	461	MobiDBLite	consensus disorder prediction	439	456	-	-
	Trre11g00097	461	PANTHER	FLIPPASE KINASE 1-RELATED	33	437	-	-
	Trre11g00097	461	Pfam	Protein kinase domain	81	265	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre11g00097	461	Pfam	Protein kinase domain	309	415	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre11g00097	461	MobiDBLite	consensus disorder prediction	432	461	-	-
	Trre11g00097	461	FunFam	serine/threonine-protein kinase D6PK-like	307	433	-	-
	Trre11g00097	461	MobiDBLite	consensus disorder prediction	1	29	-	-
	Trre11g00097	461	Gene3D	Transferase(Phosphotransferase) domain 1	308	433	-	-
	Trre11g00097	461	FunFam	protein kinase PINOID 2	79	170	-	-
	Trre11g00097	461	ProSiteProfiles	Protein kinase domain profile.	81	415	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre11g00097	461	FunFam	protein kinase PINOID	171	239	-	-
	Trre11g00097	461	Gene3D	Transferase(Phosphotransferase) domain 1	171	240	-	-
	Trre11g00097	461	SMART	serkin_6	81	415	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre11g00097	Trre-Chr11	761627	763133	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre11g00097	10	461	AGC Kinase Gene Family	AT2G34650	64.488	0.0	558

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Trre11g00097		Pkinase	5.5e-34	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre11g00097	-		-	gmx:100795536	657.521