Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00093 ATGGCCTCTAGCTACTCGAATTCTCCATGTGCTGCTTGCAAGTGTCTAAGAAGAAAATGCAATCAAAATTGCATATTTTCCCCATATTTCCCACCAGAAGATCCTCAAAAATTTGCCAATGTTCACAAAATATTTGGTGCAAGTAATGTTAGCAAAATTCTAAATGAAGTTTTACCTCATCAAAGGGAAGATACAGTGAATTCTCTAGCTTATGAAGCTGAAGCAAGGATTAAAGATCCAGTTTATGGTTGTGTTGGAGCTATTTCAGGGCTACAAAAACAACTCTTTGGGCTTCAAAAGAAACTTGAGGCTACAAATGCTGATTTAATTCAATTTACTCTTCAAGGTTCTTCTTCTCTTGGACTGGGACATGTTGATCACTCTCATGATTTTTATAATTACCCTTCTAATTTTGAGCAGTGA 423 0.3617 MASSYSNSPCAACKCLRRKCNQNCIFSPYFPPEDPQKFANVHKIFGASNVSKILNEVLPHQREDTVNSLAYEAEARIKDPVYGCVGAISGLQKQLFGLQKKLEATNADLIQFTLQGSSSLGLGHVDHSHDFYNYPSNFEQ 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00093 140 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Trre11g00093 140 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 112 - -
Trre11g00093 140 Pfam Lateral organ boundaries (LOB) domain 9 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00093 Trre-Chr11 736266 736688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00093 3 123 AS2 family AT3G27650 70.732 6.98e-63 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre11g00093 LOB 3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00093 - - mtr:11421075 236.884