Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00088 ATGAGCAACCTGATAACATTGGATCTATCTGAGAATAATATAAATGGACCAATACCTGCTACATTCAAAGGGTTAAAGACACTCCAAGTATTGTACCTTGGCAACAATGAACTGCAAGGATCGTTTATTGAGGAACTTTGTGAAATGAAGAGTTTGGGTGAGTTGAATCTAGATAATAATATGTTTTATGGAGTTTTGCCAACATGTTTGGGAAACATGACTTCTCTTAGAAACTTAAACATAGGATCTAATAGTTTTAACTCCATGATACCTTCTTCACTTTGGAATCTCAAAGATATCTTAGAGGTGAGTTTGTCCTTTAATGCTTTCATTGGTAATCTTTCTCTTGAAATTGGAAATATGAGAGCAATGATACTATTAGATCTATCAGGAAATCAAATTTCAAGCAACATTCCTACAACCATTGGTTCCTTAATAAATTTGCAGAGTCTCTCTTTAGCGCATAACAAACTAAATGGATCAATTCCAGAATCACTTGGTGAAATGCTAAGCTTGACGTCCTTGGACTTGTCCCAAAATATGTTAACCGGTGTTATTCCAAAATCCTTAACATCACTTTTGTATCTTGGAAACATCAACTTCTCATATAATAGATTACGCGGAGAGATTTCTGATGGTGGACTTTTCAAAAATTTCACAGCTCAATCATATTTACATAATGAAGCATTGTGTGGTAATCCCCGCCTACAAGTACCTCCGTGTGATAAACAAGCTAAGAAAATGTCAACAGAAAAGAAGCTACTATTACTCAAATGCATCCTCCCCATAACTGTGTCAGCCATTTTGGTTGTTGCATGCATCATACTTTTAAAACATAATAAAAGGAAAAAGGTTGAGAATACTCTTGAAAGGGGTTCATCATCTTTAGGAGCTCAAAGAAGAATTTCGTATTATGAACCTGTGCAAACAACAATTGGATTCAGTGAGAGTAATTTACTTGGAAGAGGGGGATTTGGCTCAGTTTATCAGGGGAAGCTCTCTGATGGTGAGACGATTGCGGTTAAAGTAATTGATGATTTACAATCAGAGGCAAAATCAAAAAGCTTTGATGCAGAATGCAATGCAATGAGAAACCTACGGCATCGAAATCTAGTTAAGATTATTGGCAGTTGTTCGAATAGTGATTTCAAATCATAG 1158 0.3566 MSNLITLDLSENNINGPIPATFKGLKTLQVLYLGNNELQGSFIEELCEMKSLGELNLDNNMFYGVLPTCLGNMTSLRNLNIGSNSFNSMIPSSLWNLKDILEVSLSFNAFIGNLSLEIGNMRAMILLDLSGNQISSNIPTTIGSLINLQSLSLAHNKLNGSIPESLGEMLSLTSLDLSQNMLTGVIPKSLTSLLYLGNINFSYNRLRGEISDGGLFKNFTAQSYLHNEALCGNPRLQVPPCDKQAKKMSTEKKLLLLKCILPITVSAILVVACIILLKHNKRKKVENTLERGSSSLGAQRRISYYEPVQTTIGFSESNLLGRGGFGSVYQGKLSDGETIAVKVIDDLQSEAKSKSFDAECNAMRNLRHRNLVKIIGSCSNSDFKS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00088 385 SUPERFAMILY Protein kinase-like (PK-like) 296 382 IPR011009 -
Trre11g00088 385 Pfam Leucine rich repeat 3 61 IPR001611 GO:0005515
Trre11g00088 385 Pfam Leucine rich repeat 127 182 IPR001611 GO:0005515
Trre11g00088 385 SMART LRR_typ_2 49 72 IPR003591 -
Trre11g00088 385 SMART LRR_typ_2 121 145 IPR003591 -
Trre11g00088 385 SMART LRR_typ_2 73 97 IPR003591 -
Trre11g00088 385 SMART LRR_typ_2 169 192 IPR003591 -
Trre11g00088 385 SMART LRR_typ_2 1 24 IPR003591 -
Trre11g00088 385 ProSiteProfiles Protein kinase domain profile. 314 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00088 385 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 115 238 - -
Trre11g00088 385 SUPERFAMILY L domain-like 1 234 - -
Trre11g00088 385 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524
Trre11g00088 385 Pfam Protein tyrosine and serine/threonine kinase 318 381 IPR001245 GO:0004672|GO:0006468
Trre11g00088 385 Gene3D Ribonuclease Inhibitor 1 250 IPR032675 -
Trre11g00088 385 Gene3D Phosphorylase Kinase; domain 1 284 385 - -
Trre11g00088 385 PANTHER OS04G0122200 PROTEIN 2 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00088 Trre-Chr11 693830 694987 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00088 2 384 Receptor kinase-like Gene Family AT3G47570 36.320 4.42e-66 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre11g00088 PK_Tyr_Ser-Thr 2.8e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00088 - K13420 tpra:123895878 554.673