Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00087 ATGGATGAAGGACAATCTATAACTCATACAAAGACATTCACAACTATTGGATACCTTGCACCAGAATATGGATTAAATGGAATTATTTCTATCAAAGGAGATTTGTACAGCTATGGAATTATGTTAATGGAAATCTTCACAAGAAAAAAACCAACAGATGATATGTTTGTTGGGGAGCTAAGTTTGAAAACATGGATCAGTGGATCATTGCCTAATTCTATTCTAGAGGTCTTGGATTCTAATTTAGTCCAACAATATGAGGAACAAATTGATGACATATTGACTTACATGTCAACTATTTTTAATTTAGCTCTGAATTGTTGTGAATATTCACCTGAAGCAAGAATTAAAATGACAGATGTTATAACATCGTTACTCAAAATTAAGACTTTGGTTCTTGGTGGAAATATTGTCTAG 417 0.3189 MDEGQSITHTKTFTTIGYLAPEYGLNGIISIKGDLYSYGIMLMEIFTRKKPTDDMFVGELSLKTWISGSLPNSILEVLDSNLVQQYEEQIDDILTYMSTIFNLALNCCEYSPEARIKMTDVITSLLKIKTLVLGGNIV 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00087 138 SUPERFAMILY Protein kinase-like (PK-like) 8 125 IPR011009 -
Trre11g00087 138 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 2 127 - -
Trre11g00087 138 Pfam Protein tyrosine and serine/threonine kinase 5 125 IPR001245 GO:0004672|GO:0006468
Trre11g00087 138 Gene3D Transferase(Phosphotransferase) domain 1 1 130 - -
Trre11g00087 138 ProSiteProfiles Protein kinase domain profile. 1 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00087 Trre-Chr11 692939 693607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00087 15 129 Receptor kinase-like Gene Family AT3G47570 38.261 1.10e-25 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre11g00087 PK_Tyr_Ser-Thr 3.3e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00087 - K13420 mtr:25502860 217.238