Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00085 ATGTCTGGCTTAGAGGAATTGAGAAAAAAGCTTGCACCATTATTTGATGCTGAAAAAGGTTTCTCATCAACTTCAACTTTAGACCCAAATGATTCTTATACATTTTCAGATGGTGGAACGGTGAATTTGTTGAGTAGATCATATGGAGTTTATAATATCAATGAACTTGGATTACAGAAATGCACCACATCATCATCATCATCATCATCAAGATTGAATGAAAACAACGACGATGGTGAAAAGACGTATAGATGTGGTTCTCATGAGATGAGAATTTTTGGAGCAATTGGTAGTGGTGCTAGTAGTGTTGTTCAAAGAGCTATGCATATACCTACACATAGGGTTCTTGCATTAAAGAAGATCAATATCTTTGAGAAGGAGAAAAGGCAGCAGCTACTTACTGAGATAAGGACGTTATGTGAAGCACCTTGTAATGAGGGTCTTGTGGAATTTCATGGTGCATTTTACACTCCAGACTCAGGACAGATAAGCATAGCTTTAGAGTACATGGATGGAGGATCACTTGCAGATATTTTGCGAACGCATAGAATGATACCCGAACCTATTTTATCATCCATGTTTCAGAAGCTCTTACATGGTCTAAGTTATCTTCATGGAGTCAGATATTTAGTTCATAGAGACATAAAGCCTGCTAATTTACTTGTAAATCTCAAGGGGGAGCCGAAAATTACCGATTTTGGTATTAGTGCTGGCTTAGAGAATTCAGTTGCAATGTGTGCTACATTTGTTGGAACTGTTACGTACATGTCACCCGAGCGAATTCGAAATGAAAGCTATTCTTATCCGGCTGATATTTGGAGCCTCGGTCTTGCGCTTCTCGAGTGTGGTACAGGAGAATTCCCATATACAGCTAATGAAGGTCCTGTCAATCTTATGTTACAGATCCTTGATGATCCATCACCATCTCCATCAAAAGAGAAGTTTTCACCTGAATTCTGCTCCTTTGTCGATGCATGCTTACTGAAGGATCCAGATAACAGACCAACGGCAGAGCAGCTTCTTTCGCATCCCTTCATTATGAAATACGAGACTGCCAAGGTAGATTTACCAGGTTTTGTTCGCAGTGTTTTTGATCCTACGCAAAGAATGAAGGACTTGGCAGATATGTTGACTATACATTATTACTTACTAATTGATGGACCTGATAATTTGTGGCAACATACAAAGAACTTATATAACGAAAACTCAATTTTCAGCTTCTCGGGGAAACAACATGTTGGTCCTAACAATATCTTCACGACTCTATCAAGTATTCGAACTACATTAATTGGCGATTGGCCACCGGAAAAGTTGGTACATGTGGTTGAGAAGCTTCAATGCCGAGCGCACGGTGAAGATGGAGTTGCAATAAGAGTCTCAGGATCATTTATAGTTGGTAATCAGTTTCTCATATGTGGAGATGGCATTCAAGTAGAGGGATTACCAAACTTTAAGGATCTTGGAATTGATATTTCTAGTAAGAGAATGGGTATATTTCATGAACAATTCATAGTGGAACCAACTAGTAATATTGGATGTTACACTATAGTTAAACAAGAATTGTACATTAACAAATAA 1578 0.384 MSGLEELRKKLAPLFDAEKGFSSTSTLDPNDSYTFSDGGTVNLLSRSYGVYNINELGLQKCTTSSSSSSSRLNENNDDGEKTYRCGSHEMRIFGAIGSGASSVVQRAMHIPTHRVLALKKINIFEKEKRQQLLTEIRTLCEAPCNEGLVEFHGAFYTPDSGQISIALEYMDGGSLADILRTHRMIPEPILSSMFQKLLHGLSYLHGVRYLVHRDIKPANLLVNLKGEPKITDFGISAGLENSVAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALLECGTGEFPYTANEGPVNLMLQILDDPSPSPSKEKFSPEFCSFVDACLLKDPDNRPTAEQLLSHPFIMKYETAKVDLPGFVRSVFDPTQRMKDLADMLTIHYYLLIDGPDNLWQHTKNLYNENSIFSFSGKQHVGPNNIFTTLSSIRTTLIGDWPPEKLVHVVEKLQCRAHGEDGVAIRVSGSFIVGNQFLICGDGIQVEGLPNFKDLGIDISSKRMGIFHEQFIVEPTSNIGCYTIVKQELYINK 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00085 525 Pfam Protein kinase domain 94 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00085 525 SUPERFAMILY Protein kinase-like (PK-like) 92 380 IPR011009 -
Trre11g00085 525 MobiDBLite consensus disorder prediction 62 81 - -
Trre11g00085 525 FunFam mitogen-activated protein kinase kinase 3 56 171 - -
Trre11g00085 525 ProSiteProfiles Nuclear transport factor 2 domain profile. 373 523 IPR018222 -
Trre11g00085 525 Gene3D - 372 523 - -
Trre11g00085 525 FunFam Mitogen-activated protein kinase kinase 3 370 524 - -
Trre11g00085 525 SMART serkin_6 90 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00085 525 CDD PKc_MAPKK_plant_like 91 350 - -
Trre11g00085 525 SUPERFAMILY NTF2-like 371 468 IPR032710 -
Trre11g00085 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Trre11g00085 525 ProSiteProfiles Protein kinase domain profile. 90 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00085 525 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524
Trre11g00085 525 Gene3D Phosphorylase Kinase; domain 1 58 171 - -
Trre11g00085 525 Gene3D Transferase(Phosphotransferase) domain 1 172 371 - -
Trre11g00085 525 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 27 404 - -
Trre11g00085 525 FunFam mitogen-activated protein kinase kinase 3 172 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00085 Trre-Chr11 672631 676811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00085 35 524 MAP Kinase Kinase Gene Family AT5G40440 76.735 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Trre11g00085 Pkinase 1.5e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00085 K20607 - gmx:100784935 952.97