Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00084 ATGGATGGTTGGGTTCATGGCGTTTTCGAGATGGGAGCTTTAGCCACACAGCACAATGGTGAATATATTGGTCCTCTCGCTCTCTCTTTTGCTAAGACTTCGAAATTTTCGCACATTCTTGCTTTATCTAATGAGGAAGGATATATTAGCTTGTTTGATACTCGCCGTAAATTCTTACAGCCCTCGTACTTTGAAGAAAACGCAGATAATGCAAGGATTTGTGAATGGAGTGCACATAATAATGCTGTTTTTGATGTCAATTGGATTAAGGATGATACACAGATCCTTACTGCTTCTGGTGATCAAACGGTGAAGATATGGGATGTTCAAGAAAAGAAGTGTCTTGGAGTGTTAACAGGGCACACGGGGAGTGTGAAATCTTTTTGTTCTCATCCAACTAATTCCGATATTATCGTCTCTTGTTCAAGAGATGGATCCTTTCGGCTTTGGGACTTAAGATGTAACTCCAATACTAAGAATAGGCATGGAGAAGTTAGCATATGTTCAACGGCTGTTGTAAAAGGAGCACATCTCTCATATCAAATATACCGAGTAAGGGGGCGCAAGGCCAGGGGTGCTTCCATGAGTATTACTTCTGCCCTTTGGCTCAAGGATGAAGTTTCCATAGCTACTGCTGGGGCAGCAGATAGTGTGCTGAAGTTTTGGGATACCAGAAATTTAAAAAGTATTGTCACGCAAACATGTCCTCAACCTGAGTCAACAGGAAAGCAAATATTACATGGTATATCTAGCCTGTCCCAAGATGACAGTGGACTTTTGCTCTCAGCTTCCTGCATGGATAGCCGAGTTTATCTATATAATACACTTCAACTTGAAAAGGGTCCTTTAAGACATTTTGAAGGAGGTCGTATAGATTCATTTTTTGTGAAGGCTGCAATTAGCCCCGATGCGTATAGCATAGTGTCTGGTTCTAGTACCGGAAAAGCATATGTTTGGCAGGTTGACAAGCCTCAAGTGCCACCTACTATTTTGAAGAGCCATGAAGATGATGAGGAAGTTACCGCAGTTGACTGGTGTCGTTCTGACATCGGAAAACTAGCTACTGCATCTGATGATTTCACAATCCGGATATGGAATCAACGCAGTTATGTTAGCACAACAAAGTATCCGTTTTCCATTCGAAGAAGAGTTATGGCCATGCCTAGAACAGAGTGCAAAATGCTATTAAACAATGAGGAAATTTGCCCCAAGTCAGGTCTCGATGGTCTCGAAACGCTGCACCATCCAATGAAGTCAGCCACTCCAATCACACCACCTAAAACGACTACATCAGAAGGCCATAAGAACCAGCTTTCATCAGAATTTGATCTAACCATATCTCCTAAAAACACTCCAGAGTCCGCTTTGAAAAGTCCTTCATCTGTATTGAACCCACCACCCTCCCTAAAAAGAACTATCCATAACTTGATCTTGACCGGAGATCATAGGACAGTTAAACTTGCCGATTTTGGTCTAGCCAGAAAGGAGTCGTTAACAGAAATGATGATTGCCGAAACAGGAACATATCGATGGATGGCTCCAGAACTTTACAACACTGTTACCCTAAGACAAGGTGAGAAGAAGCATTACAAACTAGAAACTCAATAA 1608 0.4192 MDGWVHGVFEMGALATQHNGEYIGPLALSFAKTSKFSHILALSNEEGYISLFDTRRKFLQPSYFEENADNARICEWSAHNNAVFDVNWIKDDTQILTASGDQTVKIWDVQEKKCLGVLTGHTGSVKSFCSHPTNSDIIVSCSRDGSFRLWDLRCNSNTKNRHGEVSICSTAVVKGAHLSYQIYRVRGRKARGASMSITSALWLKDEVSIATAGAADSVLKFWDTRNLKSIVTQTCPQPESTGKQILHGISSLSQDDSGLLLSASCMDSRVYLYNTLQLEKGPLRHFEGGRIDSFFVKAAISPDAYSIVSGSSTGKAYVWQVDKPQVPPTILKSHEDDEEVTAVDWCRSDIGKLATASDDFTIRIWNQRSYVSTTKYPFSIRRRVMAMPRTECKMLLNNEEICPKSGLDGLETLHHPMKSATPITPPKTTTSEGHKNQLSSEFDLTISPKNTPESALKSPSSVLNPPPSLKRTIHNLILTGDHRTVKLADFGLARKESLTEMMIAETGTYRWMAPELYNTVTLRQGEKKHYKLETQ 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00084 535 Gene3D Transferase(Phosphotransferase) domain 1 471 534 - -
Trre11g00084 535 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 76 110 - -
Trre11g00084 535 SMART WD40_4 239 274 IPR001680 GO:0005515
Trre11g00084 535 SMART WD40_4 279 320 IPR001680 GO:0005515
Trre11g00084 535 SMART WD40_4 183 223 IPR001680 GO:0005515
Trre11g00084 535 SMART WD40_4 69 108 IPR001680 GO:0005515
Trre11g00084 535 SMART WD40_4 111 151 IPR001680 GO:0005515
Trre11g00084 535 SMART WD40_4 324 366 IPR001680 GO:0005515
Trre11g00084 535 Gene3D - 175 386 IPR015943 GO:0005515
Trre11g00084 535 PRINTS G protein beta WD-40 repeat signature 95 109 IPR020472 -
Trre11g00084 535 PRINTS G protein beta WD-40 repeat signature 353 367 IPR020472 -
Trre11g00084 535 PRINTS G protein beta WD-40 repeat signature 138 152 IPR020472 -
Trre11g00084 535 ProSiteProfiles Trp-Asp (WD) repeats profile. 118 160 IPR001680 GO:0005515
Trre11g00084 535 ProSitePatterns Trp-Asp (WD) repeats signature. 95 109 IPR019775 -
Trre11g00084 535 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 15 474 - -
Trre11g00084 535 Pfam WD domain, G-beta repeat 113 151 IPR001680 GO:0005515
Trre11g00084 535 Pfam WD domain, G-beta repeat 75 108 IPR001680 GO:0005515
Trre11g00084 535 Pfam WD domain, G-beta repeat 329 366 IPR001680 GO:0005515
Trre11g00084 535 SUPERFAMILY WD40 repeat-like 34 377 IPR036322 GO:0005515
Trre11g00084 535 ProSiteProfiles Trp-Asp (WD) repeats profile. 76 117 IPR001680 GO:0005515
Trre11g00084 535 MobiDBLite consensus disorder prediction 447 467 - -
Trre11g00084 535 MobiDBLite consensus disorder prediction 417 436 - -
Trre11g00084 535 SUPERFAMILY Protein kinase-like (PK-like) 474 520 IPR011009 -
Trre11g00084 535 Gene3D - 13 161 IPR015943 GO:0005515
Trre11g00084 535 MobiDBLite consensus disorder prediction 422 436 - -
Trre11g00084 535 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 118 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00084 Trre-Chr11 655894 660080 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00084 475 530 MAP Kinase Kinase Kinase AT3G27560 89.286 6.30e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trre11g00084 WD40 0.00037 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00084 K11790 - gmx:100775857 640.958