Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00079 ATGACCATAAGCCGTAATCTTGAAAAGTTCATCCGAGAGAGATCCGCAAGGGCTATGGATTGGAAAATTCTTCACAAGATTGCATTAGACATAGCGCGCGCACTTTCGTATCTGCACGATAAATGTGTACCACGTGTTCTTCACGATGTCAAACCTAGCAATATCTTGTTGGACGGCGATTTCAACGCCTATCTATCCACCTTTGGACTGGCGAGACTTCTCGGAACTTCAGAGACACACACTACAACCGGTGTGGCAGGAAAATTTGGTACGTTGTTCCAGAATACGCCATGA 294 0.4558 MTISRNLEKFIRERSARAMDWKILHKIALDIARALSYLHDKCVPRVLHDVKPSNILLDGDFNAYLSTFGLARLLGTSETHTTTGVAGKFGTLFQNTP 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00079 97 Pfam Protein kinase domain 6 82 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00079 97 Gene3D Transferase(Phosphotransferase) domain 1 4 92 - -
Trre11g00079 97 ProSiteProfiles Protein kinase domain profile. 1 97 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00079 97 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 5 90 - -
Trre11g00079 97 SUPERFAMILY Protein kinase-like (PK-like) 6 89 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00079 Trre-Chr11 607832 608125 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00079 6 90 Receptor kinase-like Gene Family AT3G02130 83.721 1.22e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Trre11g00079 Pkinase 1.1e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00079 - - cill:122303067 152.91