Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00057 ATGGTGAAACCAATATTTCTAACCCACCATATCCGTTTCATAACAACTTTTTCTTCTTCTAGATTCTTCCATCCACTCCGATTCCTCTCCACAACCCCAACCCCATACCCACTCCAATACGAACTTATCATTAACCGCCCAGACCTCCCTAAACCTAACCCTCACCGTCGAACCGCTAAACCCAACGGTTCACCCGAACCAACCCAACCCGACTCTCTCCAAAATTGGGTTGACGATAAACTAACCACCGAATCCGGTTCATCTGAACTCGATAAAGCAAAGAGGAAATACTATAAGAAAAGGAGGAAGAGAATGTATGGTTCTGATTCCGATGGAGATGATCGGAGAAATGAGGAACAGTTTGTTGAATTGAAACCTGAAGTTGTTGAGTTAAGAACTTTGCATAGAAGAGAAGAAGAATTGTATTTTTATGACGCTTTTACTTATCCTTGGGAGAAAGATAAACATTATAAAATGGTTTATCAGTTAGAGAAAAAGTTTTTTCCTGATCAATGTTTGGATAAAGCTTTTCTTAAACCAGGTCAATCTAATCCAGTTTCGAATTTTTCCAATAATTCCAATGCAATTTCGAATGCAAATATTAGGAACAAAAAAGTTGGTGTTTTTGGTGGTGTTGGTGTTGGGGAGAATAATAAAGATGAGGTTGGTGATAACAAGTTGGTGTTTTTTGAGGAGAATGTGAAAGGGGAAGAAGTAAGAGAAAAGGAAAAGGGTAAGAAAGGTGGTGAGAAGAAGGTTGAGGAGTTTTTTAAGGGTTTGAAGAAAGATGTTGAAATTGTTGACCCATTTTTTTCTTCAAGGAGGACTGGTCTTCCTCCTGTTTGGGATAGTCCACATGGGACAGTGCTTTTGATTAACAAACCTAAAGGTTGGACTTCATTCACAGTTTGTGGAAAGCTTCGCCGCCTTGTCAAAGTGAAAAAGGTAGGCCATGCCGGAACTCTTGACCCAATGGCTACTGGTTTATTGATTGTTTGTGTTGGCAAAGCAACAAAACTGGTGGATAGATATCAAGGGATGATTAAGGGTTATAGTGGGGTTTTCCGCTTAGGGGAGGCTACTTCAACATGGGATGCTGATTCACCAGTCATTCAGCGTGAGCCATGGGAGCACATCAAAGACGAGGACATAAAGAAAAGTGCCTTGTCCTTTTGTGGGGAGATTTGGCAAGTTCCTCCTATGTTTTCTGCTATTAAAGTTGGAGGTGAAAAGATGTACGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCGCCTAGACGAATTTCAATTTTCCAATTTGACATAGAGCGTAGCTTGGATGACAGGCAAAATTTGATTTTTAGAGTGACTTGTTCTAAAGGAACATATATTCGGTCACTCTGTGCAGATTTTGGAAAGGCTCTTGGCAGCTGTGCCCATTTAACTGCTCTCCGAAGAGATTCAATTGGACAATATTTAGCAGATGATGCATGGGACTTTCAAGAGCTGGAAGAGGCTATCACCAAAACTTATCTTTAA 1521 0.4043 MVKPIFLTHHIRFITTFSSSRFFHPLRFLSTTPTPYPLQYELIINRPDLPKPNPHRRTAKPNGSPEPTQPDSLQNWVDDKLTTESGSSELDKAKRKYYKKRRKRMYGSDSDGDDRRNEEQFVELKPEVVELRTLHRREEELYFYDAFTYPWEKDKHYKMVYQLEKKFFPDQCLDKAFLKPGQSNPVSNFSNNSNAISNANIRNKKVGVFGGVGVGENNKDEVGDNKLVFFEENVKGEEVREKEKGKKGGEKKVEEFFKGLKKDVEIVDPFFSSRRTGLPPVWDSPHGTVLLINKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKKSALSFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYLADDAWDFQELEEAITKTYL 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00057 506 Pfam TruB family pseudouridylate synthase (N terminal domain) 308 458 IPR002501 GO:0006396
Trre11g00057 506 Gene3D Pseudouridine synthase 283 505 - -
Trre11g00057 506 NCBIfam tRNA pseudouridine(55) synthase TruB 288 497 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Trre11g00057 506 CDD PseudoU_synth_EcTruB 289 500 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Trre11g00057 506 FunFam tRNA pseudouridine synthase B 283 505 - -
Trre11g00057 506 Pfam tRNA pseudouridylate synthase B C-terminal domain 459 502 IPR032819 -
Trre11g00057 506 MobiDBLite consensus disorder prediction 45 74 - -
Trre11g00057 506 SUPERFAMILY Pseudouridine synthase 288 501 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Trre11g00057 506 Hamap tRNA pseudouridine synthase B [truB]. 286 506 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Trre11g00057 506 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 167 504 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00057 Trre-Chr11 453320 458728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00057 289 480 NAC Transcription Factor Family AT3G57150 33.333 2.30e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00057 K03177 - gmx:100793939 656.366