Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre11g00056 | ATGCAATTTTCTTTTGAACTAAACTTAGTTGTAGCCACACAAAAATTCAAAGGTGGATGCGGTGGTTTCCTTCCATCCAAAGTACATGTTTACATTACCAACAATTTAACTTATGGTCTTCAACTTGGTGTTCACTGTAAAGACAAACATCATGATATAGGATTTCGATCACTACCTTCTGGAGAAACTTACACTTTCGAATTTAGACCCGATCCCTTTTCCTTTAGTACCTTATACTTTTGTGGATTTACATGGAACCCTCATAATGTACGCCACTTTGATGTTTATATTCAAAATAGAGATTCCGCAGTTTGCGTGCATGAATGTCGCTATGAAGTACATCAATCGGGACCATGTAGGATTAATAATCGTTCAATCGGGCCAGGATCTGTAGAATGCTTTGAATGGAATAAGTAA | 417 | 0.3693 | MQFSFELNLVVATQKFKGGCGGFLPSKVHVYITNNLTYGLQLGVHCKDKHHDIGFRSLPSGETYTFEFRPDPFSFSTLYFCGFTWNPHNVRHFDVYIQNRDSAVCVHECRYEVHQSGPCRINNRSIGPGSVECFEWNK | 138 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre11g00056 | 138 | Pfam | Plant self-incompatibility protein S1 | 29 | 136 | IPR010264 | - | |
| Trre11g00056 | 138 | PANTHER | - | 24 | 123 | IPR010264 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre11g00056 | Trre-Chr11 | 449959 | 453294 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre11g00056 | 22 | 125 | Carbohydrate Esterase | AT3G16970 | 39.252 | 1.06e-19 | 77.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre11g00056 | - | - | mtr:25495108 | 130.183 |