Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00055 ATGGTTTCACTTTCGAAAATTGCGTTATCATGTTCTATGTTACTAACTATTATTATTGCTTTGCAGTTCAAAGGTGGAAAAGGGGGTTTCCTTCCACCAAGAGTATATGTTTACATTACCAACAATTTAACTTATGGTCTTCAACTTGGTGTTCACTGTAAAGACAAACATCATGATAAAGGATTTCGATCACTACCTTCTGGAGAAACTTACACTTTCGATTTTAAACCCGATCCCATTTTCACAAGTACCTTATACTTTTGTGGATTTACATGGAACCCTCATAATGTACACCGTTTTGATGTTTATATTCAAGATCGAGATGCCGCAATTTGCAAACATGAATGTCGCTATGAAATACATCAATCGGGACCATGTAGGATTAATAATAATGAAAGCGGGCCAAGATCTGTAGAATGCTTTAAATGGAATAAGTAA 438 0.3516 MVSLSKIALSCSMLLTIIIALQFKGGKGGFLPPRVYVYITNNLTYGLQLGVHCKDKHHDKGFRSLPSGETYTFDFKPDPIFTSTLYFCGFTWNPHNVHRFDVYIQDRDAAICKHECRYEIHQSGPCRINNNESGPRSVECFKWNK 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00055 145 Pfam Plant self-incompatibility protein S1 37 143 IPR010264 -
Trre11g00055 145 PANTHER - 34 131 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00055 Trre-Chr11 437452 437889 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00055 29 144 Carbohydrate Esterase AT3G16970 39.496 1.87e-22 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00055 - - mtr:25495108 153.68