Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00052 ATGATTATCAAGCGGAACTTGAAATCTCAAATGCCGAGTTTGAAACGCTGTAAACTCGCTGACTCAGTTGAAGAAGAAGAAGACAACGACTGTTCTAATTCCAATGCTCCTAAGAAGAGAAAAACCAACGGTTATTATTATCCTTTGGACCTTTTAGGTGATGTTGCCGCTGCTTTAATTCCGGCGAGTTTGCACGGTTTACTTAGTTCCGGTGTATCGGAGAAGGGATTGTCTGCATCGTGGTGCACACAAAATGTAGTTGAATCATCGAATTCCAAAGAAGAAATGGTTCCGGTGAAGAAAAAACAGGTTCAGCGACCAAGACCGCCACTTGTTCGAACTTCCAGAGGGCGTGTTCAGGTTCTTCCTTCCAAGTTTAATGATTCTGTTCTTGATAATTGGAAGAAGGATAGTAATAAGACTAGCTTGCGTGATTGTGAACTTGTAGATGAATTTGAGTGCAAGAAGGACAGGGCAGTATCGAAAATTTGCATCAACAATGTTAAAAAAGGGCGAAACCATCAGAAAATCGGTTATAAGCATCCTAAGTATTCGGCATTGTATGATGATGTTGATGTTGATGTTGGTGTGAGTGTGAGGCATAGGAGTTTTGGTAGAATGAAAGATTCAGCTTTGGATGGAGATGAAGTTGATTGGATGATGAGTTGTGATGATAAAGTTGATTTCAAGGAGAATAATGGAGAGAGGAAAGATGGGTTGTATGGACCAGAAGATTTTTATGCAGGTGATATGGTGTGGGCCAAAGCTGGTAGGAAGGAACCTTTTTGGCCCGCTGTTGTTATTGATCCTATGAAACAAGCACCTGAGCTTGTTCTTAGGTCTTTTATAGCTGATGCTGCTTGTGTCATGTTTCTCGGCAATGCCGGGAATGAAAATCAAAGGGACTATGCATGGGTGAAGCATGGCATGATCTTTCCATTTCTGGATTATGTAGACAGGTTTCAAGAGCAGCCTGAATTGAGTAACTATAGTCCCTCTGAATTCCAAATGGCAATAGAAGAAGCATTTTTGGCAGACCAAGGCTTTACAGAGAAGTTGATAGATGATATAAATGCAGCAGCTGGTGCCACTGGTTACAATGATACTATTCTAAAATCTTTCAAGGAGGTCCGTGGTTCAAACCAGTATGGAGGAACAGGAAAGCATTTTCTTAACCAGGATTCATTTGATAAGAAAGATGCGAGATCATGCGAAGCCTGTGGATTGGATCTTCCTTACAAGATGTCAAAGAAAACTAAGGGTTTAACTCCTAATGGTCAATTGCTATGTAAAACATGTGCAAGGTTAACAAAATCAAAACATTATTGTGGCATATGCAAGAAAGTTTGGAATCATTCGGATAGTGGAAGCTGGGTGCGTTGTGATGGATGTAAAGTGTGGGTGCACGCCGAATGTGACCAAATTTCTAGAAACCATTTCAAGGATCTTGAAAGCACCGATTATTTCTGCCCTACGTGCAGAGGCAAGTTTGACTTTGAGTTATCTGATTCAGAAAAAACGACAAAGACAAAAGTCAAAAACGGTGGCCAGCTAGTGCTTTCAAATAAGGTCAATGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTACACTTAGTTATATGCAAGTGTGGTTTTTGTGGGCCAGAAAAGCAAGCGCTTAGCGAATGGGAACGGCACACAGGTTCCAAATTAAGAAATTGGAAAACAAGTATTACCGTTAAAGACTCTAGGCTACCTCTGGAACAATGGATGCTGCAGGTTGCAGAATATCACGCTAATGCTCTAGTTTCTGCCAAACCTAAAAAACCTTCTTTAAAGGAAAGGAAGCATAAGTTGCTTACCTTCTTGAAAGAGAGGTATGAACCTGTCTATGCTAAGTGGACTACGGAGCGTTGCGCTGTTTGTAGATGGGTTGAAGACTGGGACTACAATAAAATTATCATTTGCAACAGATGTCAAATAGCTGTTCACCAAGAATGCTATGGAGCAAAAAATGTTAAAGACTTTACATCTTGGGTCTGTAAGGCCTGTGAAACACCGGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCGACCGATATTCACACATTATGGGTTCATGTTACCTGTGCTTGGTTTCGACCTGAAGTCTCGTTTGCTAGTGATGAGACGATGGAACCTGCTTTGGGTATTCTTAGTATTCCGTCAAATTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAAATCCATGGTTCCTGCACACAGTGTTGCAGATGTTCCACTTATTTCCATGCCATGTGCGCATCAAGGGCCGGTTACCAAATGGAGTTGCATTGCTTGAAGAAAAATGGAAAACAAACAACAAAAATGGTTTCTTATTGTGCTTACCACAGAGCTCCAAATCCCAACAATGTTTTGATTTTGCAAACCCCTCTCGGGGTAATTTCAACCAAAAGCCTTCTCCAAAAGAGAAAAGCTGGATCAAGATTAATCTCATCTACCGGAACAAAGAAAGAAGACAACACTCCTATTGATATCTCTGAGCATGACCCGTTCTCTGCGGCTAGGTGTCGTATTTATAAAAGAACAAATCATATGAAAAAGAGACAAGCAGATGAAGCCATTTATCATAAAGCGAGGGGTCACTGCCACCATCCTTTAGATGCAATACAGAGTTTGAATACATACAGAGCAGTAGTAGAGGAGCCTCAAGCTTTCTCTTCTTTCAGAGAACGCCTTTACCATTTGCAGAGAACCGAAAATCAACGGGTTTGCTTTGGTAGATCTGGCATACATGGATGGGGACTCTTTGCACGTAGGAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGCGAACAAGTAAGACGCAGCATTGCTGATCTGAGGGAGGCGCGCTATAGAGCAGAAGGAAAAGATTGCTATTTGTTCAAGATAAGCGAAGAAGTGGTGGTAGATGCCACCGATAAAGGGAACATAGCCCGGCTAATAAATCATTCTTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTGGGCGATGATCAGAGCCGGATTGTACTCATCGCTAAGACTAACGTAGCTGCTGGTGACGAGCTAACCTACGACTATTTATTCGATCCTGACGAGCCAGATGAATTTAAAGTCCCTTGCATGTGTAAAGCTCCAAATTGCAGGAAATTCATGAATTAG 3204 0.4154 MIIKRNLKSQMPSLKRCKLADSVEEEEDNDCSNSNAPKKRKTNGYYYPLDLLGDVAAALIPASLHGLLSSGVSEKGLSASWCTQNVVESSNSKEEMVPVKKKQVQRPRPPLVRTSRGRVQVLPSKFNDSVLDNWKKDSNKTSLRDCELVDEFECKKDRAVSKICINNVKKGRNHQKIGYKHPKYSALYDDVDVDVGVSVRHRSFGRMKDSALDGDEVDWMMSCDDKVDFKENNGERKDGLYGPEDFYAGDMVWAKAGRKEPFWPAVVIDPMKQAPELVLRSFIADAACVMFLGNAGNENQRDYAWVKHGMIFPFLDYVDRFQEQPELSNYSPSEFQMAIEEAFLADQGFTEKLIDDINAAAGATGYNDTILKSFKEVRGSNQYGGTGKHFLNQDSFDKKDARSCEACGLDLPYKMSKKTKGLTPNGQLLCKTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDQISRNHFKDLESTDYFCPTCRGKFDFELSDSEKTTKTKVKNGGQLVLSNKVNVLCNGVEGIYFPSLHLVICKCGFCGPEKQALSEWERHTGSKLRNWKTSITVKDSRLPLEQWMLQVAEYHANALVSAKPKKPSLKERKHKLLTFLKERYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGAKNVKDFTSWVCKACETPDIKRECCLCPVKGGALKPTDIHTLWVHVTCAWFRPEVSFASDETMEPALGILSIPSNSFVKICVICKQIHGSCTQCCRCSTYFHAMCASRAGYQMELHCLKKNGKQTTKMVSYCAYHRAPNPNNVLILQTPLGVISTKSLLQKRKAGSRLISSTGTKKEDNTPIDISEHDPFSAARCRIYKRTNHMKKRQADEAIYHKARGHCHHPLDAIQSLNTYRAVVEEPQAFSSFRERLYHLQRTENQRVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREARYRAEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDQSRIVLIAKTNVAAGDELTYDYLFDPDEPDEFKVPCMCKAPNCRKFMN 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00052 1067 SUPERFAMILY FYVE/PHD zinc finger 439 498 IPR011011 -
Trre11g00052 1067 MobiDBLite consensus disorder prediction 93 114 - -
Trre11g00052 1067 Gene3D - 243 349 - -
Trre11g00052 1067 CDD PHD_TCF19_like 443 493 - -
Trre11g00052 1067 Gene3D SET domain 830 1067 IPR046341 -
Trre11g00052 1067 Pfam PHD-zinc-finger like domain 688 800 - -
Trre11g00052 1067 ProSiteProfiles Extended PHD (ePHD) domain profile. 686 801 IPR034732 -
Trre11g00052 1067 ProSiteProfiles SET domain profile. 925 1042 IPR001214 GO:0005515
Trre11g00052 1067 SMART set_7 925 1048 IPR001214 GO:0005515
Trre11g00052 1067 ProSiteProfiles Zinc finger PHD-type profile. 440 496 IPR019787 -
Trre11g00052 1067 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 684 803 IPR013083 -
Trre11g00052 1067 ProSiteProfiles Zinc finger PHD-type profile. 632 683 IPR019787 -
Trre11g00052 1067 CDD PWWP_AtATX3-like 247 351 - -
Trre11g00052 1067 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 437 497 IPR013083 -
Trre11g00052 1067 SUPERFAMILY SET domain 918 1064 IPR046341 -
Trre11g00052 1067 SUPERFAMILY Tudor/PWWP/MBT 241 345 - -
Trre11g00052 1067 ProSiteProfiles Post-SET domain profile. 1051 1067 IPR003616 -
Trre11g00052 1067 Pfam PHD-finger 442 494 IPR019787 -
Trre11g00052 1067 CDD PHD_ATX3_4_5_like 634 680 IPR042011 -
Trre11g00052 1067 FunFam Histone-lysine N-methyltransferase 622 683 - -
Trre11g00052 1067 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 627 683 IPR013083 -
Trre11g00052 1067 Pfam SET domain 936 1041 IPR001214 GO:0005515
Trre11g00052 1067 Pfam PWWP domain 249 342 IPR000313 -
Trre11g00052 1067 FunFam Histone-lysine N-methyltransferase 899 1067 - -
Trre11g00052 1067 Pfam PHD-finger 647 681 - -
Trre11g00052 1067 CDD ePHD_ATX3_4_5_like 689 800 IPR041955 -
Trre11g00052 1067 SUPERFAMILY FYVE/PHD zinc finger 633 697 IPR011011 -
Trre11g00052 1067 ProSitePatterns Zinc finger PHD-type signature. 635 680 IPR019786 -
Trre11g00052 1067 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1067 IPR025780 -
Trre11g00052 1067 PANTHER PHD FINGER PROTEINS 26 512 - -
Trre11g00052 1067 SMART PHD_3 634 681 IPR001965 -
Trre11g00052 1067 SMART PHD_3 442 494 IPR001965 -
Trre11g00052 1067 SMART PHD_3 745 801 IPR001965 -
Trre11g00052 1067 FunFam Histone-lysine N-methyltransferase 684 803 - -
Trre11g00052 1067 CDD SET_SETD1-like 912 1063 - -
Trre11g00052 1067 ProSiteProfiles PWWP domain profile. 248 317 IPR000313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00052 Trre-Chr11 404470 411803 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00052 635 800 C2H2 Transcription Factor Family AT3G14740 34.104 2.37e-20 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre11g00052 zf-HC5HC2H_2 1.1e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00052 - - aprc:113853254 1712.97