Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00028 ATGAATCAAATTTGTTTTGAACTTCAATTGTCACCTTCTTCCGCCAATGGTCTTTGTTTGAGGATACCAAATGATTTTTCGAGAGAATACTTGAAGGGGTTCAAAGGGACGGTGAAGATTAGATTTGGTGAGGACAAAGCTATGAAAGTCAAGTTGATTATTGATGCCAATGGATCATCAATTATTACTGGGGGTTGGAAGCCATTTGCTGAAAAATATAACTTGAAATTTAAAGTTGATTATATATGTAAATTTGAGATGACTCAAAGCAATCCATTTTCATTCACTACCACAATTAATCCAGCCCAAACCAAACCAAGAAGAAGCTCTTCTAGTGATAACAATATTGGGTTGAGAAAATGCAACACTAAAGGAACTTGTAGCAACCGTCGTGCTATCTCGGATTCAAAAGGCCGTAATGTGATAAAGCATGACACATTCGAGCTTAATGTCACTTCCACCCCATACCCGTATGTATCAAATACGTTTTTGCATAGACACAAAGAATGTTGGGGAAAATTCTTGAAGTTGAAAGTGAATGGAAAGTCATGGTCCGTAAAAGTGAACTATTATCCTAAAGGTAGTAGATTATATGATGGTTGGCCAAAGTTTAAGGAAGAATGCAATTTGGAGATCGGAGACCGTTGTCGCTTTAAGTTGATTGATGAGAAAAAATTTGTGTTCGAAGTTTCATTTGAAAGAAAGAAGTAA 711 0.3615 MNQICFELQLSPSSANGLCLRIPNDFSREYLKGFKGTVKIRFGEDKAMKVKLIIDANGSSIITGGWKPFAEKYNLKFKVDYICKFEMTQSNPFSFTTTINPAQTKPRRSSSSDNNIGLRKCNTKGTCSNRRAISDSKGRNVIKHDTFELNVTSTPYPYVSNTFLHRHKECWGKFLKLKVNGKSWSVKVNYYPKGSRLYDGWPKFKEECNLEIGDRCRFKLIDEKKFVFEVSFERKK 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00028 236 ProSiteProfiles B3 DNA-binding domain profile. 180 236 IPR003340 GO:0003677
Trre11g00028 236 Pfam B3 DNA binding domain 6 99 IPR003340 GO:0003677
Trre11g00028 236 Pfam B3 DNA binding domain 168 234 IPR003340 GO:0003677
Trre11g00028 236 SUPERFAMILY DNA-binding pseudobarrel domain 4 93 IPR015300 -
Trre11g00028 236 Gene3D - 2 103 IPR015300 -
Trre11g00028 236 Gene3D - 129 236 IPR015300 -
Trre11g00028 236 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 16 228 IPR039218 -
Trre11g00028 236 MobiDBLite consensus disorder prediction 99 118 - -
Trre11g00028 236 SMART B3_2 6 99 IPR003340 GO:0003677
Trre11g00028 236 SMART B3_2 147 236 IPR003340 GO:0003677
Trre11g00028 236 CDD B3_DNA 155 234 IPR003340 GO:0003677
Trre11g00028 236 CDD B3_DNA 5 91 IPR003340 GO:0003677
Trre11g00028 236 SUPERFAMILY DNA-binding pseudobarrel domain 155 228 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00028 Trre-Chr11 274661 276560 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00028 20 225 REM Transcription Factor Family AT4G31690 23.636 4.08e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre11g00028 B3 7.8e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00028 - - cam:101508042 207.223