Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00027 ATGGTTGTTAGTGTCCCAAATTGGGAAATCTTCAAGGGTCCAAAGGCTATTACAAGGTCTCAAAGGAAGCCAAAGACCACTGAACAAGAGATAGCTGATGATGGTTCTGAGGACCAAGAGAATGCTGATGTTGATGAGGCTATGGGAGGAGATAGTGGTGCTGAGGATATGGCCACTGAAGCTATTCAGAAGGAAAGGCGATCAAAGAAGAGAAATGACAGGCCTCAAGCTTCTGATGAGGATCAGAACCCTGCTATGCCTGCCAAAAGATTGAAGTCTAGAGCTTCAAAACCAAAAGGTAGGAACAAAGGAAGTAGGGTGCAGAAGGCTAAAAAGTACACAACAAATGAAGCTGTTAATGATGAGCATCCCTATTTTGAAGTTGTAATGACAAAATCTTATGTCCATGGCAATTTCATGTGGATACCAAAGAAGTTTTCAAGAGAACACTTGAACAATTTTAATGGCAGTTCAACCCTACGGGTTGGTAAGGACTTCCCTATGAAAGTGAATATAAGTTTTAATGATAAAAATGAAAAATCTATGATAGTTGGTCGTTGGACGCGCTTTAGAAAAAATTATAATTTGCAAGTTGATGATGATTGCAAGTTTGTGATGACTAAAGATCGACCACCTTCATTCGATGTTATTATTAATCGAGCTAGAAAAGGACCAAGCCCTACGAATTTGCGAGGGAGGATCTCTTGTGATGATAATATTGCAAAGAGGAGAGACATTGGAGAAACTTCTAGGGGCCGTCCAAGAGTGCATTTTGTTGAGGATTCAGGTGGTAATATGATGAAACATTTCACATTCAAGATTTTGGTGAAAGATATTTACCCTCCATTACCAAAGGAGTTTATGAATATAGGATGTGATGAAAAACAAGTGGAGATGAAAATGGGGGACAAATCGTGGTTTGTAAAAGTGAAGTATTATGATAGTATTAAAATCAGAAAATTTGGTGAAGGTTGGAAACCATTTATTAAAGAATGCAAGTTGATCGGAAAAAAATGTTCCTTTGAGTTAATTGATGAGAAAAAATTTGTGTTTAATGTTTCAGTTGAAAGAAACAACCATTGA 1083 0.3758 MVVSVPNWEIFKGPKAITRSQRKPKTTEQEIADDGSEDQENADVDEAMGGDSGAEDMATEAIQKERRSKKRNDRPQASDEDQNPAMPAKRLKSRASKPKGRNKGSRVQKAKKYTTNEAVNDEHPYFEVVMTKSYVHGNFMWIPKKFSREHLNNFNGSSTLRVGKDFPMKVNISFNDKNEKSMIVGRWTRFRKNYNLQVDDDCKFVMTKDRPPSFDVIINRARKGPSPTNLRGRISCDDNIAKRRDIGETSRGRPRVHFVEDSGGNMMKHFTFKILVKDIYPPLPKEFMNIGCDEKQVEMKMGDKSWFVKVKYYDSIKIRKFGEGWKPFIKECKLIGKKCSFELIDEKKFVFNVSVERNNH 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00027 360 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 61 226 IPR044837 -
Trre11g00027 360 SMART B3_2 126 222 IPR003340 GO:0003677
Trre11g00027 360 SMART B3_2 271 359 IPR003340 GO:0003677
Trre11g00027 360 CDD B3_DNA 272 357 IPR003340 GO:0003677
Trre11g00027 360 MobiDBLite consensus disorder prediction 1 116 - -
Trre11g00027 360 Pfam B3 DNA binding domain 126 211 IPR003340 GO:0003677
Trre11g00027 360 Gene3D - 105 223 IPR015300 -
Trre11g00027 360 Gene3D - 264 359 IPR015300 -
Trre11g00027 360 MobiDBLite consensus disorder prediction 92 108 - -
Trre11g00027 360 SUPERFAMILY DNA-binding pseudobarrel domain 119 220 IPR015300 -
Trre11g00027 360 SUPERFAMILY DNA-binding pseudobarrel domain 271 355 IPR015300 -
Trre11g00027 360 ProSiteProfiles B3 DNA-binding domain profile. 125 222 IPR003340 GO:0003677
Trre11g00027 360 CDD B3_DNA 124 220 IPR003340 GO:0003677
Trre11g00027 360 MobiDBLite consensus disorder prediction 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00027 Trre-Chr11 223553 231893 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00027 44 221 REM Transcription Factor Family AT1G49480 23.590 3.29e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre11g00027 B3 3.6e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00027 - - tpra:123913564 339.732