Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00026 ATGTCATTTCATCACCAACTTGAATTTCATAGGATAATTACGCAAGATAAGAAGCTTAGGATTTCCAAGAAACATGTGGAGAAATATTGGAAAGGAATATCAAACCCAATATTTCTAAGATTTCCAAATGGTGTTGAACAAAAAATATTTTGGAAGGAGGAGAGTAATGGTGATGTTTGCTTTGAAAAAAATTGGGAAAATTTTGCAAAGCCTCTCAAATGTGGAAGTCTCTTAACTTTTAAACACAATGGTGGACCTTATTTCAAGGTTAAGATATTTGGTAAAGAGATAAACTATTTCAATATCAAACCTGTAGAAGTTAAAGAAGAAGATGTTGAAGGTGCTGCTGCTAAAGAAGTTATTGATTTGAGTGAAGATGAGAGTCATGATGAGAGTGAAGAAGAAGAAGAGAGTGATTATGAGTTTGAAATAGTCAAGAAACCTCAAAGGAGAACAAGTAAGAGAAAAATTCATATGGATTTGGACTCTACACAACAAAACTTTTCAAGAAGTAATCAAGAAGGGATGGTCAAAAAGGGTAAAAAATGTTCAACAAGTGAAAATCCCTTCTTTGAAGTTACATTGACAGCTTATTACGCCCATGGCCATTTCTTGTTGGTACCAAGAGAGTTCTCTAAAGAACACTTGAACAATTTTGAAGGCAGGGCAACCCTACAAGTTGGTAAGGACATGCCTCTGAAAGTGAACATAAAATTTGGTGACAACTATAGGATATGTCATATAAGAAGTGGTTGGAAGTTATTTAGGGAAAAATATAACTTGCAAGTTGGTGATTCTTGTAAGTTCGTGATGATTCAACGCCAACCACTTTTATTCGCTGTTTTTATTAATCGAGCCACAAAGGGACCGAGTCCTAAGATGTTGCATGGTTGGAGGCAAGTTGGAGGGAATTTGTGGAAGAATTCAAAATAG 933 0.3516 MSFHHQLEFHRIITQDKKLRISKKHVEKYWKGISNPIFLRFPNGVEQKIFWKEESNGDVCFEKNWENFAKPLKCGSLLTFKHNGGPYFKVKIFGKEINYFNIKPVEVKEEDVEGAAAKEVIDLSEDESHDESEEEEESDYEFEIVKKPQRRTSKRKIHMDLDSTQQNFSRSNQEGMVKKGKKCSTSENPFFEVTLTAYYAHGHFLLVPREFSKEHLNNFEGRATLQVGKDMPLKVNIKFGDNYRICHIRSGWKLFREKYNLQVGDSCKFVMIQRQPLLFAVFINRATKGPSPKMLHGWRQVGGNLWKNSK 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00026 310 MobiDBLite consensus disorder prediction 126 140 - -
Trre11g00026 310 Pfam B3 DNA binding domain 190 277 IPR003340 GO:0003677
Trre11g00026 310 SMART B3_2 9 96 IPR003340 GO:0003677
Trre11g00026 310 SMART B3_2 190 285 IPR003340 GO:0003677
Trre11g00026 310 CDD B3_DNA 189 285 IPR003340 GO:0003677
Trre11g00026 310 ProSiteProfiles B3 DNA-binding domain profile. 190 287 IPR003340 GO:0003677
Trre11g00026 310 MobiDBLite consensus disorder prediction 123 142 - -
Trre11g00026 310 MobiDBLite consensus disorder prediction 151 181 - -
Trre11g00026 310 SUPERFAMILY DNA-binding pseudobarrel domain 185 285 IPR015300 -
Trre11g00026 310 SUPERFAMILY DNA-binding pseudobarrel domain 12 95 IPR015300 -
Trre11g00026 310 Gene3D - 165 288 IPR015300 -
Trre11g00026 310 Gene3D - 2 97 IPR015300 -
Trre11g00026 310 PANTHER B3 DOMAIN-CONTAINING 6 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00026 Trre-Chr11 196681 198336 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00026 3 281 B3 DNA Binding Superfamily AT3G18990 23.653 8.61e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre11g00026 B3 6.4e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00026 - - mtr:112418291 295.819