Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05251 ATGGACAACGAGGCGGTAGAATTTGATATTGGGTTGGGAGGAGAATACGAGGAGGAGCCTATTGAGATCGAGGAGGAGGATGATGATGATGAAGAAGAAGAGGAAGATGATGAAGAATTGGATTTGGGAGAAAGCAGCGGTGCAGTGTATTTTCCAGAGGCGGGGGATCTGGAACCTTCGGAGGGTATGGAATTCGAGTCTGAAGAGGCTGCAAAGGCTTTCTATAATTCGTATGCTCGTCGTGTTGGCTTTAGTACTCGTGTGAGCTCATCTCGTCGTTCACGTCGCGACGGAGCCATAATTCAGAGACAATTCGTATGTGCAAAGGAAGGATTTCGCAATTTGAACGAGAAAAGGACGAAAGATAGAGAGATCAAAAGGCCAAGAACAGTTACTCGAGTGGGATGCAAAGCCTCTTTATCTGTTAAAATGCACGATTCTTCTGGGAAATGGATCGTATCAGGGTTCGTTAGAGAACACAATCACGAACTTGTTCCACCGGATCAGGTTCACTGCCTTCGTTCACACAGGCAAATATCTGGATCTGCAAAGACACTTATAGACACTCTACAGGCTGCTGGTATGGGTCCTCGTAGAATTATGTCTGCACTCATCAAAGAGTATGGCGGTATTAGCAAAGTCGGCTTTACCGAGGTTGACTGTAGGAATTACATGAGGAATAATCGCCACAGAAGTTTACAGGGTGACATTCAACTTGTTCTTGACTATTTGAGACAAATGCATGCTCAAAACCCTAATTTTTTCTTTGCTGTTCAAGGTGATCTTGATGACGAGGATCATTCCATCACCAATGTTTTCTGGGCTGACCCCAAGGCAAGGTTGAATTACACTTATTTCGGTGATACTGTCACTTTTGACACTACTTACCGCTCTAATAGGTATCGTTTACCCTTTGCTCCTTTTACTGGTGTTAACCATCATGGTCAGCCTGTTCTCTTTGGTTGTGCTTTTCTAATTAATGAATCCGAAGCTTCATTTGTCTGGCTTTTCAAGACATGGCTTATGGCCATGTCTGGACGCCCACCACTCTCAATAACTACCGACCATGATTCTGTTATTCAGTCCGCCATAACGCAAGTGTTCCCCAACACTCGCCACCGTTTCTGCAAGTGGCACATCTTTAAGCAATGCCAGGAGAAGTTGTCTCACATTTTCCTCCAGTTTCCAAATTTTGAAGCCGAGTTTCACAAATGTGTTAACTTGACAGACTCAATTGACGAATTCGAGTCTTGCTGGTCCAAACTTGTAGATAGATATGATCTCAGGGAGAATGAATGGCTTCAAGCAATACATTCTGCTTGCAGGCAGTGGGTACCTGTATATTTGCGAGACACATTCTTTGCAGAAATGTCCATCACTCAGCGAAGTGATAGCATGAACTCTTACTTTGATGGCTATGTGAATGCTTCAACTAGTTTAAATCAGTTCTTTAAGCTTTATGAGAAAGCGCTTGAAAGTCGCAACGAGAAAGAAGTAAGAGCAGATTATGACACAATGAATACTTTGCCAGTATTGAGGACCCCCTCTCCGATGGAGAGGCAAGCATCTGAACTTTACACAAGAAAAATTTTCATGAGGTTCCAAGAGGAGTTAGTTGGCACACTAACATTCATGGCATCCAAAGCTGAGGATGATGGGGAGGTCATTATGTATAACGTAGCTAAATTTGGAGAGGATCATAAAGGATACAACGTTAGATTCAATGTTTTGGAAATGAAAGTGACTTGCAGTTGTCAGATGTTTGAGTTTTCAGGCCTTCTTTGCAGGCATATTCTGGCAGTCTTTAGAGTTACCAATGTCCTTACTCTCCCATCTCATTATATACTGAAACGCTGGACGAGAAATGCGAAGAGCAATGTCATTCTAGAAGAACATGCTTGTGATGTATATACTTACTATTTGGAATCTCACACAGTTAGATATAATACGCTCCGACACGAGGCCTTTAAATTTGTTGATAAAGGTGCAAGCTCCCCTGAAACTTATGATGTTGCAAAGGATGCTTTACAAGAAGCTTCAAAAAGAGTTGCGCAGGTGATGCGAAAGGAGGGGAGAACTCCCATCAGCAATGGGAAGGCTAGGAGTCACTTGCTGAATGATGAAAATCGTGCTAATTACACTAGTGGCTGCCAGGATGAAAGCTTGGGCGAGCATATGAATAAGGATGATATGGATAAGCATATTGCAAAACTTACAAATGAGCTTGAGTGTGCAAATCGGAAGTGTGAAGTTTACCGTTCCAACTTGCTCTCTGTTTTGAAAACTGTTGAGGATCACAAGTTAGAGTTGTCAGTAAAGGTGGAAAATATCAAGATAAGCATGAAAGACGGCCTCTGA 2358 0.4266 MDNEAVEFDIGLGGEYEEEPIEIEEEDDDDEEEEEDDEELDLGESSGAVYFPEAGDLEPSEGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRTVTRVGCKASLSVKMHDSSGKWIVSGFVREHNHELVPPDQVHCLRSHRQISGSAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRHRSLQGDIQLVLDYLRQMHAQNPNFFFAVQGDLDDEDHSITNVFWADPKARLNYTYFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEASFVWLFKTWLMAMSGRPPLSITTDHDSVIQSAITQVFPNTRHRFCKWHIFKQCQEKLSHIFLQFPNFEAEFHKCVNLTDSIDEFESCWSKLVDRYDLRENEWLQAIHSACRQWVPVYLRDTFFAEMSITQRSDSMNSYFDGYVNASTSLNQFFKLYEKALESRNEKEVRADYDTMNTLPVLRTPSPMERQASELYTRKIFMRFQEELVGTLTFMASKAEDDGEVIMYNVAKFGEDHKGYNVRFNVLEMKVTCSCQMFEFSGLLCRHILAVFRVTNVLTLPSHYILKRWTRNAKSNVILEEHACDVYTYYLESHTVRYNTLRHEAFKFVDKGASSPETYDVAKDALQEASKRVAQVMRKEGRTPISNGKARSHLLNDENRANYTSGCQDESLGEHMNKDDMDKHIAKLTNELECANRKCEVYRSNLLSVLKTVEDHKLELSVKVENIKISMKDGL 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05251 785 Coils Coil 728 755 - -
Trre10g05251 785 ProSiteProfiles Zinc finger SWIM-type profile. 570 606 IPR007527 GO:0008270
Trre10g05251 785 Pfam SWIM zinc finger 558 604 IPR007527 GO:0008270
Trre10g05251 785 MobiDBLite consensus disorder prediction 1 43 - -
Trre10g05251 785 MobiDBLite consensus disorder prediction 1 64 - -
Trre10g05251 785 Pfam MULE transposase domain 290 382 IPR018289 -
Trre10g05251 785 Coils Coil 669 689 - -
Trre10g05251 785 SMART 26again6 581 608 IPR006564 GO:0008270
Trre10g05251 785 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 52 685 IPR031052 GO:0006355
Trre10g05251 785 Pfam FAR1 DNA-binding domain 74 166 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05251 Trre-Chr10 59257909 59261079 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre10g05251 MULE 5.5e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05251 - - gmx:100793442 1347.8