Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05247 ATGGGCAATACATGCCGTGGATCTTTGAAAGGAAAATACATCCAGGGCTTCACCCAGCCCGAGTCAGATCATTCTTCCAAGCGCAGCACAACTCGTTCTTCTCGTTCTTCCGACTCAGATCACCACAACAACACCACCACCAAACAATCTCAAAACCAACCACCACCCTTTACCTTTAAGAACGAAAACATGCGTCGAGGCCCTGATAATCAGTCTTATTATGTCTTAGGTCATAAGACTCCCAATATTCGTGATCTCTACACTCTTGGCCGTAAACTTGGTCAAGGTCAATTTGGCACCACTTATTTAGCCACCGACAATTCAACCTCCATTGAATATGCTTGCAAATCCATTTCCAAGAGAAAGCTTATTTCCAAGGAGGATGTTGAGGATGTTAGGAGGGAAATTCAGATTATGCACCATTTGGCCGGTCACAAGAACATTGTCACCATCAAAGGTGCCTATGAGGATGCACTCTATGTCCATATTGTCATGGAGCTATGTTCTGGTGGTGAGTTGTTTGATCGCATCATCCAGAGAGGTCACTATACCGAAAGGAAGGCTGCTGAGTTGACCAAAATTATTGTTGGTGTTGTTGAAGCCTGTCATTCCCTTGGTGTTATGCACAGAGATCTCAAGCCTGAAAACTTTTTGTTGGTCAACAAAGACGATGATTTCTCTCTTAAAGCTATTGACTTCGGCCTCTCCGTTTTCTTCAAACCAGGTCAAGTTTTCACCGATGTAGTTGGCAGCCCGTATTATGTTGCTCCTGAGGTTCTCCTCAAGCATTATGGTCCGGAAGCAGATGTGTGGACGGCCGGTGTCATACTTTATATATTGCTCAGTGGTGTGCCGCCGTTTTGGGCAGAGACCCAGCAGGGTATATTTGATGCAGTATTGAAGGGACATATAGATTTTGACTCAGATCCATGGCCTCTAATATCTGATAGTGGAAAAGACCTTATTAGAAAGATGCTGTGTTCTCGGCCTTCAGATCGGTTGACTGCTCATGAAGTTTTGTGTCATCCTTGGATATGTGAAAATGGAGTTGCCCCAGACAGAGCAATTGACCCTGCTGTTCTTTCTCGTCTCAAACAGTTTTCTGCAATGAATAAGCTAAAGAAGATGGCTTTACGGGTAATCGCTGAAAGTCTTTCCGAGGAGGAAATTGCTGGTTTGAGAGAAATGTTCCAGGCTATGGATACTGATAACAGTGGTGCAATCACTTTTGATGAACTAAAAGCTGGTCTAAGAAGATATGGGTCTACCCTTAAGGATACTGAAATACGTGATCTTATGGAAGCGGCCGATGTGGACAACAGTGGAACTATAGATTATGGGGAGTTTATTGCTGCAACAGTTCATCTCAACAAACTGGAGCGTGAGGAACATCTTGTTGCAGCATTCCGATATTTTGACAAGGACGGAAGTGGTTATATTACAGTTGATGAACTTCAACAAGCTTGTGCAGAACATAACATGACTGATGTTTTTCTTGAAGATATTATCAGGGAAGTTGATCAAGATAACGATGGGAGGATTGATTATGGTGAATTTTCTGCCATGATGCAAAAAGGCAATGTTGGGATTGGTAGGAGGACTATGCGCAACAGTCTGAATTTGAGCATGCGGGACGCACCAAGTGCTCAATAG 1653 0.435 MGNTCRGSLKGKYIQGFTQPESDHSSKRSTTRSSRSSDSDHHNNTTTKQSQNQPPPFTFKNENMRRGPDNQSYYVLGHKTPNIRDLYTLGRKLGQGQFGTTYLATDNSTSIEYACKSISKRKLISKEDVEDVRREIQIMHHLAGHKNIVTIKGAYEDALYVHIVMELCSGGELFDRIIQRGHYTERKAAELTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSVFFKPGQVFTDVVGSPYYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGHIDFDSDPWPLISDSGKDLIRKMLCSRPSDRLTAHEVLCHPWICENGVAPDRAIDPAVLSRLKQFSAMNKLKKMALRVIAESLSEEEIAGLREMFQAMDTDNSGAITFDELKAGLRRYGSTLKDTEIRDLMEAADVDNSGTIDYGEFIAATVHLNKLEREEHLVAAFRYFDKDGSGYITVDELQQACAEHNMTDVFLEDIIREVDQDNDGRIDYGEFSAMMQKGNVGIGRRTMRNSLNLSMRDAPSAQ 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05247 550 PANTHER SERINE/THREONINE-PROTEIN KINASE 78 519 - -
Trre10g05247 550 SUPERFAMILY Protein kinase-like (PK-like) 70 369 IPR011009 -
Trre10g05247 550 ProSitePatterns EF-hand calcium-binding domain. 473 485 IPR018247 -
Trre10g05247 550 ProSitePatterns EF-hand calcium-binding domain. 507 519 IPR018247 -
Trre10g05247 550 FunFam Calcium-dependent protein kinase 1 353 527 - -
Trre10g05247 550 FunFam Calcium-dependent protein kinase 5 173 353 - -
Trre10g05247 550 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Trre10g05247 550 FunFam Calcium-dependent protein kinase 1 89 172 - -
Trre10g05247 550 ProSiteProfiles EF-hand calcium-binding domain profile. 499 529 IPR002048 GO:0005509
Trre10g05247 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Trre10g05247 550 ProSitePatterns EF-hand calcium-binding domain. 437 449 IPR018247 -
Trre10g05247 550 ProSiteProfiles Protein kinase domain profile. 87 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g05247 550 Gene3D Transferase(Phosphotransferase) domain 1 173 354 - -
Trre10g05247 550 Gene3D - 355 527 - -
Trre10g05247 550 MobiDBLite consensus disorder prediction 43 68 - -
Trre10g05247 550 ProSitePatterns EF-hand calcium-binding domain. 401 413 IPR018247 -
Trre10g05247 550 CDD STKc_CAMK 87 344 - -
Trre10g05247 550 SMART efh_1 498 526 IPR002048 GO:0005509
Trre10g05247 550 SMART efh_1 428 456 IPR002048 GO:0005509
Trre10g05247 550 SMART efh_1 464 492 IPR002048 GO:0005509
Trre10g05247 550 SMART efh_1 392 420 IPR002048 GO:0005509
Trre10g05247 550 SUPERFAMILY EF-hand 369 526 IPR011992 -
Trre10g05247 550 Gene3D Phosphorylase Kinase; domain 1 89 172 - -
Trre10g05247 550 SMART serkin_6 87 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g05247 550 ProSiteProfiles EF-hand calcium-binding domain profile. 460 495 IPR002048 GO:0005509
Trre10g05247 550 MobiDBLite consensus disorder prediction 25 42 - -
Trre10g05247 550 Pfam Protein kinase domain 87 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g05247 550 Pfam EF-hand domain pair 393 453 IPR002048 GO:0005509
Trre10g05247 550 Pfam EF-hand domain pair 463 524 IPR002048 GO:0005509
Trre10g05247 550 MobiDBLite consensus disorder prediction 1 75 - -
Trre10g05247 550 ProSiteProfiles EF-hand calcium-binding domain profile. 388 423 IPR002048 GO:0005509
Trre10g05247 550 ProSiteProfiles EF-hand calcium-binding domain profile. 424 459 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05247 Trre-Chr10 59226970 59232562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05247 1 546 EF-hand Containing Proteins AT2G17290 84.461 0.0 954
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre10g05247 Pkinase 2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05247 K13412 - gmx:100778173 998.038