Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05245 ATGACATGCAGCAATTATTTTTCTCAGCAACAACGAACCTTCATACAAATGAGGACTGTTCTGAAAGTCATGGACAACTCTGGGGCTAAAAAAGTGATGTGCATCCATGCGTTGAAAGGAAAGTACGGAGCAAGATTAGGTGATATGATAAAAGCATCAGTGAAGGAAGCACATCCTAATGGAAAAGTGAAGAAGGGAGCGACTGTATTTGCCGTAGTTGTTCGTGCAGCAATGCCAAAGGGGAGGTGTCATGGCAGTGAGGTCAAGTTTGATGACAATGCTTTAGTGCTTGTTGACAAACAAGGGCAGCCTATTGGTACCAGAGTTTTCGGACCAGTTCCTCATGAGCTGAGGCAGAAGAAGCATGTGAAGATCCTTACATTAGCTGGGCATATTGCATAG 402 0.4403 MTCSNYFSQQQRTFIQMRTVLKVMDNSGAKKVMCIHALKGKYGARLGDMIKASVKEAHPNGKVKKGATVFAVVVRAAMPKGRCHGSEVKFDDNALVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05245 133 NCBIfam 50S ribosomal protein L14 15 132 IPR005745 GO:0003735|GO:0006412|GO:0015934
Trre10g05245 133 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 15 132 IPR000218 GO:0003735|GO:0005840|GO:0006412
Trre10g05245 133 SUPERFAMILY Ribosomal protein L14 15 132 IPR036853 GO:0003735|GO:0005840|GO:0006412
Trre10g05245 133 Hamap 50S ribosomal protein L14 [rplN]. 14 133 IPR000218 GO:0003735|GO:0005840|GO:0006412
Trre10g05245 133 Gene3D Ribosomal protein L14 14 133 IPR036853 GO:0003735|GO:0005840|GO:0006412
Trre10g05245 133 SMART Ribosomal_L14_2 14 133 IPR000218 GO:0003735|GO:0005840|GO:0006412
Trre10g05245 133 Pfam Ribosomal protein L14p/L23e 15 132 IPR000218 GO:0003735|GO:0005840|GO:0006412
Trre10g05245 133 FunFam 50S ribosomal protein HLP, mitochondrial-like 14 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05245 Trre-Chr10 59217046 59217690 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05245 25 116 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 34.694 1.14e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05245 K02874 - gmx:100818301 237.654