Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05244 ATGCTGTCTCCGGCGACAATGAAGGTGTTGCTGTTACTTCTTCTTCTAGTAACAGCAGCATCAGCAGATCTAGATTCCCAGCGAGCTGCATTGCTAGCTCTCCGTTCTTCCGTCGGCGGCCGTACCCTTTTTTGGAACGCTACCAATCAGACTCCTTGCAACTGGGCCGGCGTCCAATGCGACCACGACCGTGTCGTCGAGCTTCACCTTCCCGCCGTCGCTCTTTCCGGTCAAATACCCACCGGCATATTCTCCAATCTCACCCACCTCCGCACACTCAGTCTCCGTTTCAATGCTCTCACCGGTTCACTCCCTTCAGATCTCTCATCCTGCGTCAACCTCAGAAACCTTTACATCCAGCGAAACCTTCTCTCCGGCGAAATTCCTCAGTTCCTGTTCAACTTACCTGAATTGGTTCGACTCAACATGGGTTTCAACAACTTCTCAGGTTCTATTTCAAACTCATTCAACAACTTCACAAGACTCAAAACCCTCTTCCTCGAAAACAACCAACTTTCAGGTACCATCCCGGAGTTAGACAAACTCACCCTCGATCAGTTCAATGTATCTAACAATCTCTTAAACGGCTCTGTTCCCACAAACCTCCGGACTTTCTCTCAAGATTCCTTTCTGGGAAATTCCCTCTGCGGCAAACCTCTTTCTCTCTGTCCCGGCGAAACCGGAACAGATTCTTCTTCTCCCTTTACTGCCTCGCCGGGTAACAAAAACAGCAAGAAGAACAGCTTGTCCGGCGGAGCCATTGCTGGAATTGTAATCGGATCTATAGCGGCTCTTCTTTTGCTCGTTTTCCTTTTGATCTTCCTGTGCAGGAACAAGAGCAACAAGAAGACCAGTGCTGTTGATGTTGCAGCCGTGAAACAACATCCAGAATCTGAAATAGTTTCTCATGACAAGTCTATTTCTGACTTGGAGAACGGCAATGGATACCCTACTGCTGCTGCAGCGGCAGTTGCAGTCAACAAGGTTGAAGCAAATGGCAATGGAAACACTGCAGCTGCTGGTGGAGCTAAGAAGTTGGTGTTTTTTGGGAATGCGGAGAGGGCTTTTGATCTGGAGGATTTGTTGAGGGCATCAGCAGAGGTGTTGGGTAAAGGGACGTTCGGGACGGCGTATAAGGCAGTATTGGAGTCGGGGCCGGTGGTGGCAGTGAAAAGGTTGAAGGATGTGACAATAACTGAGAAGGAGTTCAGGGAGAAGATTGAAGCAGTGGGAGCAGTAGATCATCAGAGTTTGGTACCTCTAAGGGCTTACTATTTTAGCAGGGATGAGAAGCTCCTTGTTTATGATTACATGTCAATGGGAAGCCTCTCTGCACTATTGCATGGAAACAAAGGAGCAGGCAGGACACCGCTGAATTGGGAAATGAGATCAGGCATTGCACTAGGAGCAGCCCGTGGCATTGAGTACCTTCATTCACAAGGGCCTAATGTTTCTCATGGAAACATAAAGTCGTCTAATATCCTCTTAACCAAGTCATATGATGCAAGGGTATCTGATTTTGGGCTTGCACAGCTTGTTGGCCCCTCCTCTACCCCAAACCGTGTTGCCGGGTACCGTGCGCCGGAAGTAACTGATCCTCGCAAAGTGTCTCAAAAGGCAGATGTGTACAGTTTTGGCGTATTGCTCTTAGAACTGCTAACTGGGAAGGCACCTACACATGCTCTTCTAAATGAAGAAGGTGTAGATCTCCCCAGATGGGTTCAGTCAGTGGTTAGAGAAGAGTGGACTTCTGAAGTGTTTGATCTTGAGCTCCTTAGGTATCAGAATGTTGAAGAGGAAATGGTTCAGTTGTTGCAACTTGCTGTTGATTGTGCAGCACAATACCCCGACAAGCGCCCTTCAATGTCTGATGTGGTACGGAGCATAGAAGAGTTACGTCGATCTAGCTTGAAAGAGGAGCAAGACCAAATCCAACATGACAACAATGATATAGAATTGTAG 1962 0.4801 MLSPATMKVLLLLLLLVTAASADLDSQRAALLALRSSVGGRTLFWNATNQTPCNWAGVQCDHDRVVELHLPAVALSGQIPTGIFSNLTHLRTLSLRFNALTGSLPSDLSSCVNLRNLYIQRNLLSGEIPQFLFNLPELVRLNMGFNNFSGSISNSFNNFTRLKTLFLENNQLSGTIPELDKLTLDQFNVSNNLLNGSVPTNLRTFSQDSFLGNSLCGKPLSLCPGETGTDSSSPFTASPGNKNSKKNSLSGGAIAGIVIGSIAALLLLVFLLIFLCRNKSNKKTSAVDVAAVKQHPESEIVSHDKSISDLENGNGYPTAAAAAVAVNKVEANGNGNTAAAGGAKKLVFFGNAERAFDLEDLLRASAEVLGKGTFGTAYKAVLESGPVVAVKRLKDVTITEKEFREKIEAVGAVDHQSLVPLRAYYFSRDEKLLVYDYMSMGSLSALLHGNKGAGRTPLNWEMRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLTKSYDARVSDFGLAQLVGPSSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPSMSDVVRSIEELRRSSLKEEQDQIQHDNNDIEL 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05244 653 CDD STKc_IRAK 369 632 - -
Trre10g05244 653 SUPERFAMILY Protein kinase-like (PK-like) 367 630 IPR011009 -
Trre10g05244 653 Pfam Leucine rich repeat 78 124 IPR001611 GO:0005515
Trre10g05244 653 SUPERFAMILY L domain-like 44 205 - -
Trre10g05244 653 PANTHER OS05G0588300 PROTEIN 9 636 - -
Trre10g05244 653 FunFam Probable inactive receptor kinase RLK902 24 180 - -
Trre10g05244 653 ProSitePatterns Protein kinases ATP-binding region signature. 369 391 IPR017441 GO:0005524
Trre10g05244 653 Gene3D Ribonuclease Inhibitor 136 223 IPR032675 -
Trre10g05244 653 ProSiteProfiles Leucine-rich repeat profile. 161 183 IPR001611 GO:0005515
Trre10g05244 653 FunFam pollen receptor-like kinase 1 332 437 - -
Trre10g05244 653 Pfam Protein kinase domain 366 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g05244 653 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Trre10g05244 653 Gene3D Transferase(Phosphotransferase) domain 1 438 652 - -
Trre10g05244 653 Gene3D Phosphorylase Kinase; domain 1 331 437 - -
Trre10g05244 653 Gene3D Ribonuclease Inhibitor 25 134 IPR032675 -
Trre10g05244 653 FunFam Probable inactive receptor kinase At1g48480 438 641 - -
Trre10g05244 653 ProSiteProfiles Protein kinase domain profile. 363 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05244 Trre-Chr10 59203613 59206030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05244 21 633 Receptor kinase-like Gene Family AT1G48480 64.423 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre10g05244 Pkinase 1.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05244 - - gmx:100818955 983.4