Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05241 ATGGGGATTTGCTGGAGTTATCCACCTAAAGATCCAACTCCAACTCCAACTGGAACTGTTACACCTACAGGGATATCTCATTCTCAGACAACAAGTGGAAGCTATGGTATTAGTTCCACCACCACTGCTTCAACAACAACTACTTTCACTATTTCTTCTGGAAGTGGAAGTGGAAGCAGCACCATAAGTAGAAGCAACTTCTCATCAGTCTCTGATTATTCAATTGGTGGCCAGATCTTACCTACTTCTAATTTGAGGATCTTTACTTTTGCTGAATTGAAGGCTGCTACCAAGAATTTCAAAGCTGATACACTTCTTGGTGAAGGAGGTTTTGGTAAAGTCTACAAAGGATGGCTTGATTCCAAGAATAGTAGTAGTGGAACTACCGTTGCCGTCAAAAAATTGAACTCTGAAGGCTACCAAGGACTCGAGGAGTGGCAGTCAGAAATACATTTTCTAGGACGGCTTTATCATCCTAACCTTGTTAAGCTGTTGGGATACTGTTACGAGGAAACAGAACTTCTTCTTGTTTATGAATACATGCAGAGGGGAAGTTTAGAACATCATCTCTTTGGAAGGGGTGCTGCTGTTCAGCCACTTTCTTGGGATCTCAGGCTTAAGATAGCAATTGGAGCTGCTGCTGGCCTTTCCTTTTTGCATACATCCGATCGAGAAATTATTTATAGAGACTTTAAGGCCTCCAATATATTGCTTGATGGGGCCTATAATGCAAAGATATCAGATTTTGGACTTGCAAAGCTGGGTCCTTCAGCAAGTCAATCCCATTTGTCAACAACTGTTATGGGCACGCCTGGTTATGCAGCTCCTGAATATATGCAAACAGGGCATCTATATGTAAAGAGTGACGTGTATGGGTTTGGAGTTGTTTTGGTTGAGATACTCACAGGCCTACGAGCCATCGATCCCAACCAACCAACCGGGTTTCACAGTCTAACGGACTGGATCAAACCGCACCTACCTGATAGAAGAAAATTGAAGAAGGTTATGGATGATCACTTGGGAGGTGAATATCCAATGAAAGCTGCACTTCCTATAGCCAAGCTTGCTTTAAAATGTCTTGCACCTGAGCCCAAAATGCGCCCCTCCATGAAGAATGTTTTGGAGACCTTGCAGGGAATTCAAGCTTCCACAAACAAAACTGTGGAGGTTAGGGGTCATCATTAA 1185 0.4295 MGICWSYPPKDPTPTPTGTVTPTGISHSQTTSGSYGISSTTTASTTTTFTISSGSGSGSSTISRSNFSSVSDYSIGGQILPTSNLRIFTFAELKAATKNFKADTLLGEGGFGKVYKGWLDSKNSSSGTTVAVKKLNSEGYQGLEEWQSEIHFLGRLYHPNLVKLLGYCYEETELLLVYEYMQRGSLEHHLFGRGAAVQPLSWDLRLKIAIGAAAGLSFLHTSDREIIYRDFKASNILLDGAYNAKISDFGLAKLGPSASQSHLSTTVMGTPGYAAPEYMQTGHLYVKSDVYGFGVVLVEILTGLRAIDPNQPTGFHSLTDWIKPHLPDRRKLKKVMDDHLGGEYPMKAALPIAKLALKCLAPEPKMRPSMKNVLETLQGIQASTNKTVEVRGHH 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05241 394 SUPERFAMILY Protein kinase-like (PK-like) 70 377 IPR011009 -
Trre10g05241 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Trre10g05241 394 ProSitePatterns Protein kinases ATP-binding region signature. 106 134 IPR017441 GO:0005524
Trre10g05241 394 CDD STKc_IRAK 106 380 - -
Trre10g05241 394 Gene3D Phosphorylase Kinase; domain 1 76 180 - -
Trre10g05241 394 MobiDBLite consensus disorder prediction 1 41 - -
Trre10g05241 394 ProSiteProfiles Protein kinase domain profile. 100 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g05241 394 Gene3D Transferase(Phosphotransferase) domain 1 181 392 - -
Trre10g05241 394 Pfam Protein tyrosine and serine/threonine kinase 102 377 IPR001245 GO:0004672|GO:0006468
Trre10g05241 394 FunFam Serine/threonine-protein kinase BIK1 67 180 - -
Trre10g05241 394 PANTHER OS01G0588500 PROTEIN-RELATED 49 381 - -
Trre10g05241 394 MobiDBLite consensus disorder prediction 17 41 - -
Trre10g05241 394 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 181 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05241 Trre-Chr10 59178172 59179723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05241 74 381 Receptor kinase-like Gene Family AT4G02010 49.196 1.34e-95 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre10g05241 PK_Tyr_Ser-Thr 6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05241 - - mtr:11430234 603.979