Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05239 ATGGAATATGGTGGCGGGCTAGTCGGAGACGGTGGTGTGTTTGGGAGCATGGTGGGAGGAGGAGGAGGAGAAGCAGCAGCAGATATGATTGAGGAGCTTTTGGTAGATGGTTGTTGGATTGAAGCCAGTGAGAATAATATGATGGCGATGCAGACACAGACACAATATATGACTAATAATAATATTCCCATTGGAATGGGAGAGGGATCAGACCACTTTAATAATCATCATCATAATCAAATTGAATGCAATGTTCCAACAGATCATGATGATGATGATCATGAAAGTGGTAATTTTGTTGTTGGGAAGAGATGGTGGATTGGGCCTAGGGCTAATCCAGGTCCATCAACTTCTGTCAAAGAAAGATTAGTAGTTGCTGTTGGTTACTTAAAAGAGTACACAAAGAATTCCTCAAACAACGTTCTCATTCAGATATGGGTGCCAGCTCTAAGGAGGAGATCACCTCTAATTCACAATCACTACTTGCATCAGTCCTCATCATCTGCTCCGGTTTCTGTTAATCCAAACACCAATGTTCACGTTCGTTTCTTCAGAAGCCATGAGTATCCCAGGCATCAGCAGCAGCAATATGGATCTCTTTTTGCACTTCCAGTCTTCGAAAGAGGAAGCGGAACATGCCTCGGTGTCATTGAGTTTGTTATCACCAACCAAACCGTTGTCAATTACCGTCCAGAACTTGATCATCTCTCCAATGCTCTTGAGGCTGTTGATTTTAGAAGTAGTCACAACATGACTATTCCATCGGCAGTAAAGGTATTTGAGGAGTTGTATGAAGCAGCAGTGAACGAGATCGTAGAGGTGTTGGCATCGGTGTGCAAGACGCACAATTTGCCATTGGCACTCACATGGGCTCCTTGCATACAACAACAAGGAGGAGGAGTTAGAGGAAAAGGTACTGCCGGTGCAGCAGGGTGCGGTGTTTCAGTCGCAGTTCCAACCGATCAGATGAATAATAATCAGATGATGATGAACTGCGTTTCCACCGTTGATTCAGCTTGTTATGTTGGTGACATGGAGGTATTGGGATTCCAAGAAGTGTGCAGTGAGTATCACCTTTTCAACGGACAAGGAATAGTAGGAACAGCCTTCACAACAACCAAACCTTGTTTCGCAATTGACATTACCGCCTTTAGCAAAGCCGAATACCCACTCGCTCACCACGCTAACATGTTTGGCTTGCACGCCGCGGTTGCAATTCCACTTAGGAGTGTCTACACCGGATCTGCTGCTGATTTTGTTTTGGAATTTTTCCTACCTAAAGATTGTCGCGATCCCGAACAACAGAAACACATGCTCAACTCATTGTCCCTTGTTGTTCAACAAGCTTGTAGAAGCTTGCATTTGCATGTGGTCATGGATGATAATGAAAATGCTAATCATCATGATCATGACCAAGATCAATTCACCTTCCCAACAACAACAAATAATTACATGCCTTCTTCTGCTTCTGATGCTGCTACTGCATCACTGTCACAAGTTGATGCAACATCAGGTTGCTCAACAAAAGACACATCATCATCATGTTCTTGGATTGCACATATGATGGAGGCACAACACAAAGGAAAAGGTGTGTCGGTGTCTTTGGAATATCTTCAAGAGCCTAAAGAAGAGTTCAAAGTCACAACATGCAACTGGGACAGGGAGAGGGAGGGCAATTCTGTCTTTTCAGAATTCGGCCAAGTTCTGCAGCATGACCAGAGCAGTAATTCAACAGCAAGTGTTGAAGCTGGGGAAGAATCCGGTGGCTGCGGTGTTGGTGGTGGTCGCCGGTCGTCTTCTTCTTCCAGTGGGAGAAAGTCGGGCGACAAGCGAAGAACCAAGGCCGAGAAGACTATTAGCTTGCCGGTTCTGAGACAATACTTCGCCGGAAGCCTAAAAGATGCCGCAAAGAGCATCGGTGTATGTCCTACCACTCTGAAAAGGATATGCAGACAGCATGGGATTACAAGATGGCCTTCGAGGAAAATAAAGAAAGTGGGCCACTCTTTGAAGAAACTTCAACTGGTGATTGATTCCGTTCAAGGCGCAGAGGGCGCGATACAGATTGGCTCTTTCTATGCAAGCTTTCCAGAGTTGAGCACTGCAACTGCTAATGGTGGTGGAGGTGATCATAACAACAACGGCTTCTATAACAGCCATGGAGATGGAGTAGTTACTGGTTTGAAATCTCCACCCTCTGCTTGCAGCCAGACACATGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAAACAAACTTATCACTGCTAGCACCATTAATGGAGAACATCATCATAATCATCATCATCATCATGTTATGATGACAGAAAACCCTGCAGCTCCTTCCGCAGCAGATGCATTAAATATGATGCATGCATCCAATATCAATATCCAAAACTACCAGCAGTTGCAAGAGGATCAGGATACTAAACAATTACTGCTACATTTCAACAACAATAACAATCAAACCCTACCTCCAAGGCCAACTGCAGGAGGAGCCTGGAACAGCAACAATAATTCATCATCATCAGGACTACTGGAAAGGGGTGCTTTCAGAGTGAAGGCAACTTTCGCGGATGAAAAGATTCGTTTTAGTTTGCAAGCAATGTGGGGTTTCAGAGATTTGCAGCTTGAGATTGCAAGGCGTTTCAACCTAAATGATATGAACAACTTGGTTTTAAAGTATTTGGATGATGAAGGAGAATGGGTAGTATTATCATGTGATGCTGATCTTGAAGAATGTAAAGACTTGCACACATCTTCTCACACACGTACAATCAGACTGTCACTATTTCAAGCTTCACCTCTCAATCTACCAAACAACTTCCGCAACAGCAGCAGCAGTCCATCCTCCTAG 2853 0.4451 MEYGGGLVGDGGVFGSMVGGGGGEAAADMIEELLVDGCWIEASENNMMAMQTQTQYMTNNNIPIGMGEGSDHFNNHHHNQIECNVPTDHDDDDHESGNFVVGKRWWIGPRANPGPSTSVKERLVVAVGYLKEYTKNSSNNVLIQIWVPALRRRSPLIHNHYLHQSSSSAPVSVNPNTNVHVRFFRSHEYPRHQQQQYGSLFALPVFERGSGTCLGVIEFVITNQTVVNYRPELDHLSNALEAVDFRSSHNMTIPSAVKVFEELYEAAVNEIVEVLASVCKTHNLPLALTWAPCIQQQGGGVRGKGTAGAAGCGVSVAVPTDQMNNNQMMMNCVSTVDSACYVGDMEVLGFQEVCSEYHLFNGQGIVGTAFTTTKPCFAIDITAFSKAEYPLAHHANMFGLHAAVAIPLRSVYTGSAADFVLEFFLPKDCRDPEQQKHMLNSLSLVVQQACRSLHLHVVMDDNENANHHDHDQDQFTFPTTTNNYMPSSASDAATASLSQVDATSGCSTKDTSSSCSWIAHMMEAQHKGKGVSVSLEYLQEPKEEFKVTTCNWDREREGNSVFSEFGQVLQHDQSSNSTASVEAGEESGGCGVGGGRRSSSSSSGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYASFPELSTATANGGGGDHNNNGFYNSHGDGVVTGLKSPPSACSQTHAAAAAAAAAGNKLITASTINGEHHHNHHHHHVMMTENPAAPSAADALNMMHASNINIQNYQQLQEDQDTKQLLLHFNNNNNQTLPPRPTAGGAWNSNNNSSSSGLLERGAFRVKATFADEKIRFSLQAMWGFRDLQLEIARRFNLNDMNNLVLKYLDDEGEWVVLSCDADLEECKDLHTSSHTRTIRLSLFQASPLNLPNNFRNSSSSPSS 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05239 950 MobiDBLite consensus disorder prediction 821 842 - -
Trre10g05239 950 SUPERFAMILY CAD & PB1 domains 838 934 - -
Trre10g05239 950 PANTHER PROTEIN NLP8 74 945 IPR045012 GO:0003700
Trre10g05239 950 Gene3D - 848 934 - -
Trre10g05239 950 MobiDBLite consensus disorder prediction 573 616 - -
Trre10g05239 950 ProSiteProfiles PB1 domain profile. 849 932 IPR000270 GO:0005515
Trre10g05239 950 SMART PB1_new 849 932 IPR000270 GO:0005515
Trre10g05239 950 Pfam RWP-RK domain 619 666 IPR003035 -
Trre10g05239 950 Pfam PB1 domain 850 931 IPR000270 GO:0005515
Trre10g05239 950 ProSiteProfiles RWP-RK domain profile. 605 686 IPR003035 -
Trre10g05239 950 CDD PB1_NLP 850 931 IPR034891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05239 Trre-Chr10 59144420 59147706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05239 28 949 NLP Transcription Factor Family AT4G35270 40.260 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trre10g05239 PB1 3.8e-14 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05239 - - tpra:123881749 1556.96