Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05238 ATGAAATCAGAAGATAATTCTGATCATAGTGGCGATTCTTGTTCACACAAGAAGAAAGATCATCAACAACAACAACATCGTCCATATTCTTCTTCTCTCTCTGGAAAGAAACGGAAGCAAGAAGCAGAATCATCATCATCAGCCGCCAACAACAACGAGAACAATGTCGCTCGTGCTTGTAGTGAATGCGGTAAGAAATTCTGGTCATGGAAGGCTCTTTTTGGTCACATGCGTTGTCATCCTGAACGTGAATGGAGAGGCATTAATCCTCCTCCCAATTTCCGACGAAGACAATCTTCTTCTCACTCATTCGTCAATACCATGACTCCTAACGATCACGAAGTTGCTTCCTGTTTGATCTTACTTGCAAATTCAAAGCCCAGAGTGGATGATGATGATGCATTAGTAGATCAAGAAAATAATAATGGTCATTTTGTGTGTTCATTTTGTAACAAGGTTTTTGGATCGCATCAGGCTCTTGGTGGACACAGAGCAAGTCACAAGAATGTCAAGGGCTGTTTCGCCAACACTACAACAACTCCTCCAATAACCGCTTCCACTAGCAGAATGATGACGTGGACACAACAAACCACCCAAGGAGGAGTAAGAGATCATGCTTTTCTTGTTACTCCTCCTGTTCATCATCATGATCATGAACAACAACACCAGATAATGGTGCCTAATGCTGGTGACGTGGAAAGGGAAGCGGTTAATGAGATAAGTGGCGGAGGAGGAGGAGGAGGAGGAGGGGGACACCACCAATGTAGCATATGTTTTAGGGTGTTTACCACGGGACAAGCACTCGGTGGTCACAAAAGGTGTCACTGGGAAAAAGGGGAAACCACCGCAGGAGCAGCAGCATTGGACTCTGCTGCAACAACATCCAACAACAACAACAAGTCTTCTTCAAGTGTTAATGTTGTTGACTTGAATTCCCCGTTTCCTCCACCACCACCACCACCTCCTGATGATCCTGATGAGCCTAATCTTGATTTGAGGTTGTAG 1005 0.4458 MKSEDNSDHSGDSCSHKKKDHQQQQHRPYSSSLSGKKRKQEAESSSSAANNNENNVARACSECGKKFWSWKALFGHMRCHPEREWRGINPPPNFRRRQSSSHSFVNTMTPNDHEVASCLILLANSKPRVDDDDALVDQENNNGHFVCSFCNKVFGSHQALGGHRASHKNVKGCFANTTTTPPITASTSRMMTWTQQTTQGGVRDHAFLVTPPVHHHDHEQQHQIMVPNAGDVEREAVNEISGGGGGGGGGGHHQCSICFRVFTTGQALGGHKRCHWEKGETTAGAAALDSAATTSNNNNKSSSSVNVVDLNSPFPPPPPPPPDDPDEPNLDLRL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05238 334 SUPERFAMILY beta-beta-alpha zinc fingers 59 167 IPR036236 -
Trre10g05238 334 MobiDBLite consensus disorder prediction 311 325 - -
Trre10g05238 334 MobiDBLite consensus disorder prediction 292 334 - -
Trre10g05238 334 ProSitePatterns Zinc finger C2H2 type domain signature. 147 167 IPR013087 -
Trre10g05238 334 Gene3D Classic Zinc Finger 59 167 - -
Trre10g05238 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Trre10g05238 334 MobiDBLite consensus disorder prediction 292 310 - -
Trre10g05238 334 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Trre10g05238 334 SMART c2h2final6 145 167 IPR013087 -
Trre10g05238 334 SMART c2h2final6 253 275 IPR013087 -
Trre10g05238 334 SMART c2h2final6 58 80 IPR013087 -
Trre10g05238 334 Pfam C2H2-type zinc finger 59 82 - -
Trre10g05238 334 Pfam C2H2-type zinc finger 252 277 - -
Trre10g05238 334 Pfam C2H2-type zinc finger 144 168 - -
Trre10g05238 334 MobiDBLite consensus disorder prediction 1 19 - -
Trre10g05238 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 253 280 IPR013087 -
Trre10g05238 334 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 16 322 - -
Trre10g05238 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 145 172 IPR013087 -
Trre10g05238 334 ProSitePatterns Zinc finger C2H2 type domain signature. 255 275 IPR013087 -
Trre10g05238 334 MobiDBLite consensus disorder prediction 1 50 - -
Trre10g05238 334 SUPERFAMILY beta-beta-alpha zinc fingers 251 278 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05238 Trre-Chr10 59106511 59108418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05238 52 289 C2H2 Transcription Factor Family AT4G35280 45.749 6.63e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre10g05238 zf-C2H2_6 3.1e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05238 - - tpra:123920869 376.326